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Donkey anti goat alexa488

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Donkey anti-goat Alexa488 is a secondary antibody conjugated with the Alexa Fluor 488 fluorescent dye. It is designed to detect and visualize primary antibodies raised in goat. This product can be used in various immunoassay techniques, such as immunofluorescence and Western blotting, to specifically label and detect target proteins of interest.

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10 protocols using donkey anti goat alexa488

1

Immunostaining Procedure for Zebrafish Embryos

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Immunostaining was performed as previously described (Lewellis et al., 2013 (link)). Briefly, embryos were fixed in 4% PFA for two hours at room temperature. Following fixation, they were permeabilized in methanol at −20°C, rehydrated, permeabilized with 10 μg/ml proteinase K in PBST for 8 minutes at room temperature, and post-fixed in 4% PFA for 20 minutes at room temperature. Embryos were blocked in 2% BSA in PBST for 1 hour and incubated in primary antibody at 4 degree C overnight. Following PBST washes, they were incubated in secondary antibody overnight at 4 degree C. Rabbit anti-GFP (1:1000, Invitrogen), affinity-purified goat anti-GFP (1:100, (Venkiteswaran et al., 2013 (link))), affinity-purified sheep anti-mCherry (1:1000, custom-made antibody generated against bacterially-produced, recombinant full-length mCherry protein by Covance), zns-2 (1:50, Developmental Studies Hybridoma Bank) and mouse anti-ZO-1 (1:500, ThermoFisher) were detected with goat anti-rabbit-Alexa488 (1:1000, Invitrogen), donkey anti-rabbit- Cy3 (1:1000, Jackson ImmunoResearch), donkey anti-goat-Alexa488 (1:1000, Invitrogen), donkey anti-goat-Cy3 (1:1000, Jackson ImmunoResearch), donkey anti-sheep-Alexa647 (1:1000, Jackson ImmunoResearch), donkey anti-mouse-Cy3 (1:1000, Jackson ImmunoResearch) and donkey anti-mouse Alexa647 (1:1000, Jackson ImmunoResearch) secondary antibodies.
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2

Multimodal Brain Tissue Immunostaining

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Brain tissues were preserved in 30% sucrose at 4 °C and sectioned into 30 μm thick sections. Sections were dried overnight at room temperature. Primary antibodies for zonula occludins (ZO, 1:250 rat anti-ZO, Abcam), claudin-5 (1:250 mouse anti-claudin5, Abcam) microglia (1:250 goat anti-Iba, Abcam), astrocytes (1:250, chicken anti-GFAP, Abcam), and blood vessels (1:50, mouse anti-CD31, Abcam) were prepared in 1xPBS containing 0.01% triton-x (Sigma) and either 0.5% normal donkey serum (Sigma) or normal goal serum (Sigma). Primary antibody solutions were then added to tissue sections for 8–12 h at 4 °C. Sections were washed twice in 1x PBS (Gibco) to minimize dendrimer washing off from tissue. Secondary antibodies for microglia (1:250 donkey anti-goat Alexa488, Invitrogen), astrocytes (1:250 goat anti-chicken Alexa 488, Invitrogen), and blood vessels (1:50 donkey anti-mouse Alexa488, Invitrogen) were prepared in 1xPBS with 0.01% triton-x and added to tissue sections for 2 h. Sections were washed twice in 1x PBS, then stained with 1:1000 DAPI (Invitrogen). Slides were washed twice in 1x PBS and then allowed to dry overnight in the dark. Mountain medium (Dako) was added to each slide and a glass coverslip placed on top. Slides were stored at 4 °C until imaged and at 20 °C for long-term storage.
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3

Single-cell Immunophenotyping of Differentiated Cells

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About 106 differentiated cells were dissociated into single-cell with 0.25% trypsin or accutase at 37 oC. Intracellular antibody staining was performed using Becton Dickinson Cytofix/Cytoperm and Becton Dickinson Perm/Wash buffer according to manufacturer instructions. The following concentrations of primary and secondary antibodies were used: anti-FOXA2 (rabbit IgG, 1:500, GeneTex); anti-SOX17 (mouse IgG, 1:500, R&D Systems); anti-PDX1 (goat IgG, 1:500, R&D Systems); anti-insulin (guinea-pig IgG, 1:500, Dako); donkey anti-rabbit-Alexa 568,1:1000 (Invitrogen, Carlsbad, CA, USA), donkey anti-mouse-Alexa 488, 1:1000 (Invitrogen), donkey anti-goat-Alexa 488,1:1000 (Invitrogen) and goat anti-guinea pig-Alexa 488,1:1000 (Invitrogen). The cells were then washed with FACS buffer (PBS contains 2% fetal bovine serum, FBS). Control samples were stained with isotype-matched control antibodies. The cells were washed and resuspended in FACS buffer and then processed for analysis on FACS Accuri C6 (BD) or FlowJo software.
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4

Immunofluorescence Analysis of Nuclear Proteins

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The following primary antibodies were used for immunofluorescence experiments: Anti-Huntingtin Protein Antibody, clone mEM48, MAB-5374, Millipore (1:500); lamin B1 Antibody (S-20), sc-30264, Santa Cruz (1:5000); lamin B1 Antibody, 12987-1-AP, Proteintech (1:500); RanGAP1 Antibody (H-180), sc-25630, Santa Cruz (1:500); Anti-GLE1 antibody (ab96007), Abcam (1:200); Anti-phospho-Histone H2A.X (Ser139) Antibody, clone JBW301, Millipore (1:500). Secondary antibodies include: Donkey anti Mouse Cy3, Jackson immunology, 715-165-151, (1:500); Goat anti Rabbit Alexa488, Invitrogen, A11008, (1:500); Donkey anti Goat Alexa488, Invitrogen, A11055, (1:500).
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5

Immunofluorescence Labeling of P2X2 and P2X3

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Coverslips with plated neurons were fixed with 4% PFA and blocked with superblock (Thermo Fisher Scientific) for 30 min. Human HNSCC tissues were resected and fixed with 4% PFA, dehydrated, embedded in paraffin, and cut into 8-μm sections. Sections were then deparaffinized and blocked with superblock. H&E staining was performed to confirm cancer lesions. For immunofluorescence labeling, neurons or tissue sections were then incubated for 24 h at 4°C in rabbit anti-P2X3 (1:500, Alomone Labs) and goat anti-P2X2 (1:500, Santa Cruz Biotechnology). The sections were then washed in phosphate-buffered saline (PBS) with Triton X-100 and incubated in secondary antibody chicken anti-rabbit Alexa-594 (1:1000, Invitrogen) and donkey anti-goat Alexa-488 (1:1000, Invitrogen) in a dark chamber for 2 hours at room temperature. Control experiments were performed by incubation in secondary antibody alone and by applying P2X2 blocking peptides (Santa Cruz Biotechnology), and P2X3 blocking peptides (Alomone Labs). The coverslips or sections were washed and visualized with images acquired using a Nikon Ti Eclipse microscope (Nikon).
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6

Characterization of Inflammatory Cells in Diabetic Prostate

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The number and type of inflammatory cells were characterized in the prostate of Akita and WT mice. Three random areas from each prostatic lobe from each animal were acquired (WT: n = 4; diabetic: n = 4). Neutrophils were identified and quantitated in H&E stained sections. Immunohistochemistry was used to quantitate monocytes/macrophages, T lymphocytes, B lymphocytes, and fibrocytes. Briefly, sections were blocked for 4 hours in PBS containing 10% donkey serum and 1% BSA (both from Sigma-Aldrich, St. Louis, Missouri) was followed by primary antibodies-rat anti-F4/80 (1 : 50, eBioscience, San Diego, CA), rabbit anti-CD3 (1 : 100, Dako, Carpinteria, CA) and goat anti-CD20 (1 : 100, Santa Cruz, Santa Cruz, CA), and rat anti-CD45 (1 : 100, Abcam, Cambridge, MA) and rabbit anti-vimentin (1 : 100, Abcam, Cambridge, MA) overnight at 4 degrees. Secondary antibodies-donkey anti-rat Alexa 594, donkey anti-rabbit Alexa 594, donkey anti-rat Alexa 488, and donkey anti-goat Alexa 488 (1 : 100, Invitrogen, Grand Island, NY) were incubated for one hour at room temperature. Four μg/mL of Hoechst 33258 (Sigma-Aldrich, St. Louis, Missouri) was incubated for 10 minutes. For quantification of each cell type, three random areas from each prostatic lobe from each animal were acquired using Nikon eclipse Ti-U microscope.
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7

Analysis of Nanog-expressing Embryos

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Mice carrying NanogmCherry were naturally mated and then embryos were obtained from pregnant moms around embryonic day (E) E3.75. Embryos were then processed for immunofluorescence, as previously described (O'Hagan et al, 2021 (link)), using the following reagents: goat-anti-SOX17 (1:2000; R&D; AF1924), goat-anti-SOX2 (1:2000; Neuromics; GT15098), donkey-anti-goat Alexa488 (1:400; Invitrogen; A-11055), and DRAQ5 (1:400; Cell Signaling Technology; 4084).
Embryos were imaged using an Olympus FluoView FV1000 Confocal Laser Scanning Microscope system with a 20 × UPlanFLN objective (0.5 NA) and 3 × digital zoom. For each embryo, z-stacks were collected with 5-μm intervals between optical sections. Optical sections are displayed as an intensity projection over the z-axis.
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8

Immunofluorescence of Colon Markers

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Immunofluorescence of H-PGDS, c-kit and COX-2 was performed, as described previously29 (link). Briefly, excised colons were fixed in 4% paraformaldehyde at 4 °C for 2 h. Cryosections (4 μm) were blocked with PBS containing 0.05% Triton X-100 and 3% normal goat serum albumin at room temperature for 15 min. The sections were then immunostained using primary antibodies against H-PGDS (Cayman Chemicals, 1:500, rabbit), c-kit (Merck Chemical, Darmstadt, Germany, 1:125, rat) and COX-2 (Santa Cruz Biotechnology, Santa Cruz, CA, 1:100, goat) at 4 °C overnight. The secondary antibodies, goat anti-rabbit Alexa 568 and goat anti-rat Alexa 488 or donkey anti-goat Alexa 488 (Invitrogen, Carlsbad, CA, 1:500), were incubated at room temperature for 2 h. Images were captured using an Eclipse E800 fluorescence microscope (Nikon, Tokyo, Japan).
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9

Immunofluorescence Labeling of Cellular Junctions

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The following primary antibodies were used: goat polyclonal anti‐VE‐cadherin (1:200, sc‐6458, Santa Cruz Biotechnology), anti‐β‐catenin (1:100, #610 154, BD Transduction Laboratories), rabbit polyclonal anti‐pY658‐VEC[14] (1µg mL−1), and mouse monoclonal anti‐58K Golgi protein (1:100, ab27043, Abcam). The secondary antibodies were donkey anti‐goat‐Alexa 488 (Invitrogen, A‐11055), donkey anti‐Mouse‐Alexa 555 (Invitrogen, A‐31570), chicken anti‐rabbit‐Alexa 647 (Invitrogen, A‐21443), and donkey anti‐mouse‐Alexa 488 (Invitrogen, #A21202).
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10

Immunostaining of Embryonic Stem Cells

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Embryos were washed twice with DPBS supplemented with 0.1% BSA and fixed with 4% paraformaldehyde in DPBS at room temperature (RT) for 15 minutes. Fixed embryos were permeabilized using 0.2% Tween-20 and 0.2% Triton X-100 in DPBS at RT for 15 minutes, followed by blocking with 10% donkey serum in DPBS at RT for 1 hour. Samples were stained with anti-SOX2 (5 μg/mL) and anti-SOX17 (1 μg/mL) in DPBS containing 10% donkey serum at 4°C overnight. After washing 3 times in washing solution (DPBS with 0.2% Tween-20 and 1% BSA for 10 minutes), embryos were incubated with donkey anti-rabbit Alexa594 or donkey anti-goat Alexa488 (Invitrogen, Waltham, MA, USA; 1:5,000) in DPBS with 10% donkey serum at RT for 1 hour. For double staining, samples were stained again with primary and secondary antibodies. The steps were the same, but primary antibody treatment was conducted at RT for 2 hours. All samples were washed 3 times with washing solution after secondary antibody treatment. Immunostained embryos were mounted on a glass slide with Prolong Gold and 4′, 6-diamidino-2-phenylindole (DAPI) (Invitrogen, USA) and cured for more than 24 hours. We described the list of antibodies in Table 3. The digital imaging system for microscope (DS-L1; Nikon, Japan) was used to obtain fluorescence and bright-field images. We used the ImageJ program for images.
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