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Rabbit anti caspase 3

Manufactured by Cell Signaling Technology
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Rabbit anti-caspase-3 is a primary antibody specifically targeting the caspase-3 protein. Caspase-3 is a key executioner caspase that plays a central role in the apoptotic pathway. This antibody can be used to detect and analyze the expression of caspase-3 in various experimental systems.

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146 protocols using rabbit anti caspase 3

1

Subcellular Fractionation and Western Blot Analysis

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Subcellular fractionations were carried out as previously described with modifications.40 The purity of each fraction was further validated by using anti‐rabbit TLR‐4 (Santa Cruz, sc‐10741; membrane marker), anti‐rabbit Caspase‐3 (Cell Signaling, 9662S; cytosolic marker), and anti‐rabbit Histone H3 (Cell Signaling, 4499s; nuclear marker).41 Western blot was performed on flash snap‐frozen human myocardium tissues as we previously published.40, 41 The below primary antibodies were used: anti‐rabbit TFR‐1 (Cell Signaling, 13208s); anti‐rabbit FPN (Novus, NBP1‐21502); anti‐rabbit FTN (Abcam, ab75973); anti‐mouse DMT‐1 (Abcam, ab55735), followed by incubation with HRP‐conjugated secondary antibodies at 1/5000 dilution (Cell Signaling). The total protein loadings were visualized by MemCode reversible stain (24585, Thermo Scientific) as a loading control. Fiji ImageJ software (NIH, Bethesda, MD) was used for band intensity quantitation.
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2

Protein expression analysis by Western blot

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Total protein was extracted from cells using Tissue or Cell Total Protein Extraction Kit (Sangon Biotech). Equivalent protein from different samples was separated by protein electrophoresis, following by transformation onto PVDF membranes (Merck Millipore, Billerica, MA, USA). The membranes were incubated with the anti-rabbit caspase-3, cleaved-caspase-3, caspase-9, cleaved-caspase-9, PINK-1, Parkin, BNIP3, Beclin-1 and LC3A/B (1:1000, Cell Signaling Technology, Danvers, MA, USA) at 4 °C overnight after immersed into sealed liquid. After the membranes were washed with TBST for several times, goat anti-mouse IgG antibody (1:1000, Cell Signaling Technology) labeled with horseradish peroxidase were incubated with the membranes as a secondary antibody. Anti-mouse β-actin antibody (1:1000, Cell Signaling Technology) was used as a reference protein for normalization. The gray levels of the protein bands were examined by Image J software.
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3

Western Blot Analysis of Autophagy and Apoptosis Markers

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p62, LC3, caspase-3, and SLC7A11 protein levels were analyzed by western blotting. The cells were treated with 2.5 mM Hcy or 2.5 μM chloroquine (CQ) for 24 h, washed with Dulbecco's phosphate buffered saline (DPBS), and lysed in lysis buffer [50 mM HEPES (pH 7.4), 5 mM EDTA, 120 mM NaCl, 1% Triton X-100, protease inhibitors (10 μg/mL aprotinin, 1 mM phenylmethylsulfonyl fluoride, 10 μg/mL leupeptin) and phosphatase inhibitors (50 mM sodium fluoride, 1 mM sodium orthovanadate, 10 mM sodium pyrophosphate)]. The lysate was centrifuged at 10,000×g for 15 min and 15 μg of protein in the supernatant was resolved by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The separated proteins were blotted onto a polyvinylidene difluoride (PVDF) membrane. The membrane was incubated with the following primary antibodies: anti-rabbit LC3 polyclonal antibody (Novus Biologicals, Centennial, CO, USA), anti-rabbit p62 (Cell Signaling Technology, Danvers, MA, USA), anti-rabbit caspase-3 (Cell Signaling Technology), anti-rabbit SLC7A11 (Cell Signaling Technology), and anti-mouse β-actin polyclonal antibody (Sigma-Aldrich). Following primary antibody incubation, the membrane was incubated with horseradish-peroxidase (HRP)-conjugated secondary antibodies. Chemiluminescence was detected with Immobilon (Merck, Darmstadt, Germany).
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4

Comprehensive Immunostaining Procedure for Drosophila Gut

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Dissection, fixation and immunostaining were performed as described by [68 (link)]. The following antibodies were used: mouse anti-Prospero (MR1A-c, Developmental Studies Hybridoma Bank (DSHB)) at 1:200; mouse anti-Arm (N2 7A1-s, DSHB) at 1:50; rabbit anti-Caspase3 (Cell Signaling, #9661) at 1:300; rabbit anti-DH31 (gift from Jan Veenstra [40 (link)]) and Michael Nitabach [31 (link)]) at 1:500. The secondary antibodies used were anti-mouse Alexa647, anti-rabbit Alexa488, anti-rabbit Alexa546 (Invitrogen). All secondary antibodies were used at 1:1000. Phalloidin-Alexa555 (Molecular Probes, A34055) were used at 1:500 2h at room temperature or 1:2000 overnight at 4°C. Guts were mounted in Fluoroshield-DAPI medium (Sigma) and observed with a Zeiss Axioplan Z1 with Apotome 2 microscope. Pictures in Fig 4M and 4N were acquired using a Zeiss LSM 880 confocal equipped with a Fast AiryScan. Images were analyzed using ZEN (Zeiss) and Photoshop software. Image acquisition was performed at the Microscopy platform of the Institut Sophia Agrobiotech (INRA 1355-UNS-CNRS 7254-Sophia Antipolis).
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5

Antibody-based Protein Expression Analysis

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Antibodies used were rabbit anti‐LAMP2A (# ab125068; Abcam), mouse anti‐β‐actin (# A5316; Sigma‐Aldrich), rabbit anti‐caspase‐3 (# 14220; Cell Signaling Technology), rabbit anti‐Ki67 (# ab15580; Abcam), rabbit anti‐p53 (# 9282; Cell Signaling Technology), rabbit anti‐Bax (# 2870; Cell Signaling Technology), rabbit anti‐Bcl‐2 (# ab32503; Abcam), and rabbit anti‐GAPDH (# 5174; Cell Signaling Technology). Cisplatin (CDDP) was obtained from Yakult Co., Ltd. Paclitaxel (PTX) was obtained from FUJIFILM Wako.
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6

Immunohistochemistry Antibody Protocol

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Goat-Alexa Fluor® 488 and 594 conjugated anti-mouse or anti-rabbit secondary antibodies were used (Molecular Probes, Eugene, USA). Primary antibodies included rat-anti-CD68 (Serotec, Edinburgh, UK), rabbit-anti-actin, mouse-anti-GFAP, mouse-anti-MAP-2 (Sigma Aldrich, Steinheim, Germany), mouse-anti-huntingtin (Millipore, Schwalbach, Germany), rabbit-anti-LC3 and rabbit-anti-p62 (Enzo Life Sciences, Lörrach, Germany), rat-anti-LAMP-2 (Abl93) and rat-anti-LAMP-1 (1D4B) (DSHB, Iowa City, US), rabbit-anti-LAMP-2A (Pineda, Berlin, Germany), rabbit-anti-cathepsin D (a kind gift from Prof. J. Aerts), mouse-anti-MEF2D (BD Biosciences (Heidelberg, Germany), rabbit-anti-GAPDH and rabbit-anti-α-synuclein (C-20) (Santa Cruz, Dallas, US), rabbit-anti-caspase-3, rabbit-anti-phospho-PRAS40 and rabbit-anti-PRAS40 (Cell Signalling, Frankfurt am Main, Germany) and rabbit-anti-NSE (Abcam, Cambridge, UK).
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7

Immunostaining of Drosophila Neural Tissues

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Different stages of larval brains and adult brains were dissected in ice-cold Schneider’s Drosophila medium (Gibco). Samples were fixed for 18 min in PBS (10 mM NaH2PO4/Na2HPO4, 175 mM NaCl, pH 7.4) with 4% paraformaldehyde at room temperature (Zhang et al, 2016 (link)). The samples were incubated with primary antibodies at 4°C overnight, and then with secondary antibodies at room temperature for 1–2 h. Antifade mounting medium (P0126; Beyotime) was used to protect the fluorescent signals of the samples. Images were obtained using an Olympus FV1000 confocal microscope and processed using Adobe Photoshop.
The primary antibodies in this study were as follows: mouse anti-Pros (1:50; DSHB); guinea pig anti-Dpn (1:1,000, a gift from Y. Cai); rabbit anti-Ase (1:1,000, a gift from Y. Cai); rabbit anti-caspase 3 (1:1,000, Asp175; Cell Signaling); rabbit anti-phospho-histone 3 (Ser10) (1:1,000; Millipore); rabbit anti-histone H2AvD pS137 (1:1,000; Rockland). All commercial secondary antibodies used were from the Jackson Laboratory. DNA was stained with DAPI (C1002; Beyotime) at 1:2,000.
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8

Immunostaining of PDCD10 in Tissue Sections

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Immunostaining of laminin was performed as described previously [27 (link)]. For immunofluorescent staining of PDCD10, sections were incubated with rabbit anti-PDCD10 (Atlas, 1:65) at 4 °C overnight and then incubated with biotinylated goat anti-rabbit IgG (Dako, 1:400) at 37 °C for 1 h followed by the substrate reaction with FITC-labelled avidin (Dako, 1:400) at room temperature for 1 h. For double-immunofluorecent staining, the following antibody mixtures were applied to the sections: rabbit anti-PDCD10 (Atlas, 1:65) and mouse anti-GFAP (Sigma, 1:200); rabbit anti-PDCD10 and mouse anti-CD31 (Dako, 1:20); rabbit anti-PDCD10 and mouse anti-CD68 (Dako, 1:100); rabbit anti-PDCD10 and mouse anti-PCNA (Dako, 1:200); mouse anti-PDCD10 (Santa Cruze, 1:50) and rabbit anti-caspase 3 (active form) (Cell signaling, 1:400). After incubation overnight, the sections were incubated with the mixture of biotinylated goat anti-rabbit IgG (1:400) and Texas red anti-mouse IgG (H + L) (Vector Laboratories, 1:200) followed by the substrate reaction with FITC-labelled avidin. Counterstaining was performed with Hoechst-33258. The sections were finally analyzed by using a fluorescence microscope with ApoTome System (Zeiss, Axio Imager M2).
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9

Antibody Reagent Identification for Cell Analysis

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The rabbit anti-Bcl-XL, the rabbit anti-caspase-3, the rabbit anti-LC3, the mouse anti-PARP1, the rabbit anti-actin antibodies were from Cell Signaling (ref. no. 2764, 9662, 2775, 9546, 4970 respectively). The rabbit anti-ATG6, the rabbit anti-total Bax and the rabbit anti-total Bak were from Santa Cruz Biotechnology (ref. no. sc-11427, sc-493 and sc-832 respectively). The mouse anti-caspase-1 was from Adipogen (ref. no. AG-20B-0048). The rabbit anti-ATG5 was from Abcam (ref. no. ab108327). The rat anti-MLKL was from Merck Millipore (ref. no. MABC604). The mouse FITC-labelled anti-CD19 was from Beckman Coulter (ref. no. A07768).
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10

Immunohistochemical Analysis of p53, Acetylated p53, Ki67, and Caspase-3

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Tissue sections (4-µm thick) were prepared from formalin-fixed, paraffin-embedded blocks and were immunohistochemically stained with rabbit anti-p53 (1:100; Abcam, Cambridge, UK), rabbit anti-acetylated p53 (K382) (1:100; Abcam, Cambridge, UK), rabbit anti-Ki67 (1:100; Abcam, Cambridge, UK), rabbit anti-caspase 3 (1:100; Cell Signaling Technology), and rabbit anti-cleaved caspase 3 (1:100; Cell Signaling Technology) antibodies. Localization of the target protein was visualized by incubating sections with a freshly prepared 3,3′-diaminobenzidine (DAB) solution for 3 min. PBS was substituted for the primary antibody as the negative control. Three slides from each tissue were independently evaluated by two observers with an Olympus FV500 optical microscope (Olympus, Tokyo, Japan).
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