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135 protocols using anti slug

1

Immunocytochemistry and Immunofluorescence Assay of EpCAM and Slug

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For the immunocytochemistry assay, SiHa-Vec and SiHa-Slug cells were seeded onto cover slips for 48 h, washed with PBS three times, fixed with 4% paraformaldehyde for 20 min, and permeabilized with 0.1% Triton X-100 for 20 min at room temperature. The cover slips were incubated with anti-EpCAM (1:200 dilution, sc-25,308, Santa Cruz, USA) and anti-Slug (1:50 dilution, #9585, Cell Signaling Technology, USA) at 4 °C overnight, and a horseradish peroxidase-conjugated secondary antibody was added for 30 min at room temperature.
For the immunofluorescence assay, after incubation with anti-EpCAM (1:50 dilution, sc-25,308, Santa Cruz, USA) and anti-Slug (1:50 dilution, #9585, Cell Signaling Technology, USA) overnight at 4 °C and washing with PBS, the cover slips were incubated with fluorescently conjugated secondary antibodies (Alexa Fluor 555, #A-31,570 and Alexa Fluor 488, # A-21,206, Thermo Fisher Scientific, USA) for approximately 60 min at room temperature. Finally, the cells were washed with PBS and incubated with DAPI (Solarbio). Cell images were taken with a laser scanning confocal microscope (Leica). The cells were imaged with an Olympus CX31 microscope digital camera and Leica DFC 500 digital camera and processed with ImageJ software.
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2

Protein Extraction and Western Blot Analysis

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Cells were lysed in buffer containing 150 mM NaCl, 1.0% nonidet-P40, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulfate (SDS), 50 mM Tris, pH 8.0, and a protease inhibitor cocktail (Roche Applied Science, Vienna, Austria, pH 7.4). Frozen tissue samples stored in liquid nitrogen were cut into pieces with scissors. Each sample was homogenized in lysis buffer at a ratio of 1:20 w/v. After a centrifugation at 13,000 rpm for 20 min step the supernatant was used to measure the total protein. Electrophoresis was performed as described previously20 (link). The following primary antibodies were used for western blot analysis: anti-LAMB3 (1:1000; OriGene Technologies Inc. Rockville, MD, USA) anti-phospho-Akt (Ser 473), anti-total Akt, anti-vimentin, anti-Slug, anti-Snail, anti-β-actin (1:1,000; Cell Signaling Technology Inc, Danvers, MA, USA), LAMA3, LAMC2, anti-E-cadherin, and anti-N-cadherin (1:1,000; Santa Cruz Biotechnology, Santa Cruz, CA, USA). Following incubation with the corresponding horseradish peroxidase-conjugated secondary antibodies (1:10,000; Santa Cruz Biotechnology), immunoreactive bands were visualized by enhanced chemilumi-nescence (ECL) detection.
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3

Antibody Acquisition for EMT Analysis

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Anti-vimentin, anti-Snail, and anti-Slug antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-NUCB2, anti-Twist1, and anti-Ki-67 antibodies were obtained from Abcam (Cambridge, MA, USA). Anti-E-cadherin, anti-p21waf1, anti-BCL2, and anti-cyclin D1 antibodies were from Dako (Copenhagen, Denmark). Anti-p27kip1, anti-Rb, anti-X-linked inhibitor of apoptosis (XIAP), anti-BAX, and anti-N-cadherin antibodies were from BD Biosciences (San Jose, CA, USA). Anti-ZEB1 and anti-β-actin antibodies and adriamycin (ADR: D1515) were from Sigma-Aldrich Chemicals (St. Louis, MO, USA). Anti-phospho (p) Rb at Ser807/811, anti-cleaved caspase-3, and anti-poly (ADP-ribose) polymerase 1 (PARP1) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-cyclin A2 and anti-cyclin B1 antibodies were from Novocastra (Newcastle, UK) and Santa Cruz Biotech (Santa Cruz, CA, USA), respectively.
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4

Antibody Characterization for Cell Signaling

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Anti-ALK, anti-phospho-Akt at serine (Ser) 473 (pAkt), anti-Akt, anti-Slug, anti-Snail, and anti-cleaved caspase 3 antibodies were purchased from Cell Signaling (Danvers, MA, USA). Anti-Sox11 and anti-β-actin antibodies and doxorubicin were obtained from Sigma-Aldrich Chemicals (St. Louis, MO, USA). Anti-N-myc, anti-Twist1, and anti-Histone H1 antibodies were from Abcam (Cambridge, MA, USA). Anti-NF-κB/p65, anti-p27kip1, and anti-bax antibodies were from BD Biosciences (San Jose, CA, USA). Anti-bcl-2 and anti-p21waf1 antibodies were from Dako (Glostrup, Denmark). Anti-cyclin A antibody was from Novocastra (Newcastle, UK). Recombinant human tumor necrosis factor (TNF)-α, transforming growth factor (TGF)-β1, and hepatocyte growth factor (HGF) were purchased from R&D Systems (Minneapolis, MN, USA).
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5

BBSKE Regulates EMT Signaling

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1, 2- [bis (1, 2-Benzisoselenazolone-3 (2H) -ketone)] ethane (BBSKE) was obtained from the Organoselenium Research Center at Peking University, China. Human recombinant TGF-β1 was purchased from Sino Biological Inc., Beijing, China. Antibodies used for Western blotting were anti-TXN, anti-TXNRD1 (Epitomics, USA); anti-p-Akt (Ser478), anti-Akt, anti-E-cadherin, anti-N-cadherin, anti-p-GSK-3β (Ser9), anti-GSK-3β, anti-Snail, anti-Slug and anti-Twist (Cell Signaling Technology, Danvers, MA, USA), and anti-β-actin (Santa Cruz, USA). LY294002 was purchased from Beyotime Biotechnology Corporation (Haimen, China). NADPH and DTNB [5, 5′- dithiobis (2-nitrobenzoic acid)] were purchased from Sigma (St. Louis, MO, USA).
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6

Western Blot Analysis of EMT Markers

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Proteins were electrophoresed by SDS/PAGE (12% or 10% gel) and the blots were incubated overnight with primary antibody. The following primary antibodies were used: anti-ALOX12 (Santa-Cruz, sc-365,194), anti-E-Cadherin (Cell signal Technology, #14472), anti-N-Cadherin (Cell signal Technology, #13116), anti-Vimentin (Cell signal Technology, #5741), anti-Snail (Cell signal Technology, #3879), anti-Slug (Cell signal Technology, #9585), anti-MMP2 (Abcam, ab37150), anti-MMP7 (Abcam, ab5706), anti-MMP9 (Abcam, ab38898), anti-MMP13 (Abcam, ab39012), anti-GPR31 (Abcam, ab75579), anti-PI3K (Cell signal Technology, #4249), anti-AKT (Abcam, ab179463), anti-AKT (phospho T308, Abcam, ab38449), anti-NF-κB (Abcam, ab16502), anti-NF-κB (phospho S536, Abcam, ab86299), anti-GAPDH (Abcam, ab181602).
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7

Western Blotting Analyses of PI3K Signaling

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Western blotting analyses were performed using the following antibodies: anti PI3K-C2α, anti PI3K-C2β (BD Transduction Laboratories); anti p110β, anti p110α, anti pERK1-2 (Thr202-Tyr204), anti pMEK1-2 (Ser217-221), anti PTEN, anti TCF8/ZEB1, anti ZO-1, anti β catenin, anti Vimentin, anti Claudin-1, anti Slug (Cell Signaling Technology); anti Tubulin, anti ERK2, anti Actin (Santa Cruz Biotechnology); anti GAPDH (Abcam); anti-rabbit IgG, anti-mouse IgG (Sigma Aldrich, UK). Transient downregulation of enzymes of interest was obtained using the following siRNAs: PI3K-C2β (sequence 1): AAGAATGCGACGCCTGGCAAG (Qiagen); PI3K-C2β (sequence 2): Cat. No. J-006772-08 (Dharmacon); p110β (Dharmacon, smartpoolA); Slug: Cat. No. J-017386-05 (Dharmacon). Non-targeting siRNAs (Ambion or Dharmacon), designated as ‘si NC’, were used as control.
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8

Western Blot Analysis of Cell Signaling

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The cells were collected and lysed in RIPA buffer (Cell Signaling Technology, USA). Homogenates of cells were clarified by centrifugation at 14,000 x g for 15 min at 4°C. The supernatants were collected, and the protein concentrations were measured by the BCA Protein Assay Kit (Sigma, USA). SDS-PAGE was performed on 40 μg of protein from each sample, gels were transferred to PVDF membranes (Millipore, USA) and incubated with the anti-GAPDH (Sigma, USA), anti-ALDH1A3 (Abcam, UK), anti-MMP2 (Abcam, UK), anti-snail and anti-slug (Cell Signaling Technology, USA). Followed by incubation with Peroxidase-Conjugated AffiniPure secondary antibody (ZSGB-BIO, China), the protein bands in the membranes were developed using Bio-Rad GelDoc XR System and analyzed by Image Lab 5.0 (Bio-Rad laboratories).
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9

Western Blot Analysis of Protein Expression

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Total proteins were extracted with RIPA lysis buffer (Beyotime, Shanghai, China), and electrophoresed using 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Bio-Rad, Hercules, CA, USA). Membranes were blocked in Quick Block (Beyotime, Shanghai, China) for 15 min, then incubated with specific primary antibodies (1:1000) at 4°C overnight. Anti-PAX5 (Biorbyt, Cambridge, UK), anti-slug, anti-E-cadherin, anti-vimentin, anti-p-LATS1, anti-LATS1, anti-p-YAP, and anti-YAP (Cell Signaling Technology, USA) were used. Membranes were incubated in secondary antibodies at room temperature for 1 hour. TBST was used to wash unbound antibodies. An enhanced chemiluminescence detection system was used to detect target proteins. GAPDH and β-actin were internal controls.
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10

Protein Extraction and Western Blot Analysis

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Each sample was lysed in buffer containing 0.1% sodium dodecyl sulfate, 1.0% Nonidet-P40, 0.5% sodium deoxycholate, 50 mM Tris, pH 8.0, 150 mM NaCl, and a protease inhibitor (Roche Applied Science, Vienna, Austria, pH 7.4). Tissue samples were minced with scissors, and then the total protein was extracted. Electrophoresis was performed as described previously [45 (link)]. The primary antibodies involved included anti-SHMT2, anti-OCT4, anti-SOX2, anti-NANOG, anti-non-phospho-β-catenin, anti-β-catenin, anti-CYCLIN D1, anti-Slug, anti-Snail, anti-β-actin (1:1000; Cell Signaling Technology Inc., Danvers, MA, USA), anti-GAPDH, anti-E-cadherin, anti-N-cadherin, anti-NICD1, and anti-HES1 (1:1000; Santa Cruz Biotechnology, Dallas, TX, USA). After incubation with the corresponding horseradish peroxidase-conjugated secondary antibodies (1:5000; Santa Cruz Biotechnology), immune reactive bands were visualized by enhanced chemiluminescence detection (Bio-Rad Laboratories, Inc., Hercules, CA, USA).
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