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13 protocols using cd44 apc

1

Apoptosis and Cancer Stem Cell Analysis

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Apoptosis assay was performed using Annexin V-FITC and propidium iodide staining kit (Keygen, Nanjing, China) according to the manufacturer’s protocol. To detect CD133+/CD44+ cells, CD133-PE (#130–090-853) and CD44-APC (#130–098-110) antibodies (Miltenyi Biotec.) were utilized to label cells. Then, labelled cells were subjected to flow cytometric analyses.
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2

Flow Cytometry Immunophenotyping of Cells

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Flow cytometry analysis for hematopoietic and non-hematopoietic cell surface markers was performed on freshly isolated mononuclear cells and on adherent cell populations at p0 and p1. Cells were incubated with single or combinations of the following mouse monoclonal anti-human antibodies in PBS containing 1% fetal calf serum for 30 min at 4 °C: CD45-Alexa 488 (1:20, Beckman Coulter, Nyon, Switzerland), CD45-APC (1:5), CD73-PE-Cy7 (1:40), CD105-PE (1:40), CD90-BV421 (1:13), CD146-PeCy7 (1:20), HLA-DR-PE (1:5), CD19-PE (1:5), CD11b-PE (1:5, all BD Bioscience), CD44-APC (1:10), CD34-PE (1:10, both Miltenyi Biotec, Bergisch-Gladbach, Germany), NG2-PE (1:10), PDGF-rβ-Alexa 700 (1:20, both R&D Systems). Unstained isotype (IgG1-PeCy7 (1:20, BD Bioscience)) and single antibody controls were included. Flow cytometry was performed using a BD Aria III, and a minimum of 25,000 events were acquired for each sample, and data were analyzed using BD FACS Diva 6.1.3. Appropriate compensation settings and gating were applied in order to account for cellular debris, cell doublets, spectral overlap, and autofluorescence.
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3

Flow Cytometry Analysis of Stem Cell Markers

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Expression of cell surface markers CD90, CD44, and CD49f was determined using a MACSQuant flow cytometer using the MACSQuant Analyzer 10 software (Miltenyi Biotec GmbH, Bergisch Gladbach, Germany) and labelled antibodies CD90-PE, CD44-APC, and CD49f-FITC (Miltenyi Biotec GmbH, Bergisch Gladbach, Germany).
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4

CD44+ Cell Apoptosis Assay

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Cells after isolation by MACS were certified by CD44-APC (Miltenyi Biotec, Germany) FACS analysis as manufacturer's protocol. For apoptosis assay, in brief cells after 48 h treatment by BRM270 were resuspended in 100 μl binding buffer containing 5 μl Annexin V-FITC conjugated antibody and 5 μl propidium iodide for exactly 10 min in the dark at room temperature. Cells were then analyzed on BD Accuri C6 cytometer (BD Biosciences, NJ, US).
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5

Multicolor Flow Cytometry Analysis of Immune Cell Subsets

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Two different stains were performed with fluorochrome-conjugated antibodies. The first staining consisted of CD45R (B220) PE (Miltenyi Biotech, REA755); CD4 FITC (Miltenyi Biotech, GK1.5); CD8 PerCP-Vio 700 (Miltenyi Biotech, 53–6.7); CD69 APC-Vio 770 (Miltenyi Biotech, H1.2F3); CD44 APC (Miltenyi Biotech, IM7.8.1). The second staining included CD11b APC (Miltenyi Biotech, M1/70); CD103 PE (Miltenyi Biotech, REA789); F4/80 PE-Vio 770 (Miltenyi Biotech, REA126); MHCII APC-Vio 770 (Miltenyi Biotech, REA813). Fc receptors were blocked with Anti-mCD16/CD32 (BD). Only events that appeared single in forward-scatter width were analyzed. FACSCanto II and FACSDiva software (BD) were used for flow cytometry and data were analyzed using FlowJo software (TreeStar).
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6

Apoptosis and Cancer Stem Cell Analysis

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Apoptosis was evaluated using Annexin V-FITC and a PI staining kit (BD Transduction Labs). Flow cytometric analyses were used to detect CD133+/CD44+ cells. CD133/2(293C3)-PE (#130-090-853) and CD44-APC (#130-098-110) antibodies (Miltenyi Biotec Inc.) were utilized to label cells.
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7

Comprehensive Immune Cell Profiling

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Surface and intracellular staining were performed using routine protocols as described before [52 (link)]. The following antibodies were used: Ki67-APC (Biolegend, San Diego, CA, USA), CD44-APC and CD326/EpCAM-APCVio779 from Miltenyi Biotec (Bergisch Gladbach, Germany). Apoptosis was evaluated by Annexin V/Iodure Propidium staining using the Annexin V-FITC Apoptosis Detection Kit (Invitrogen™ eBioscience™).
ALDH activity was measured by flow cytometry with ALDEFLUOR (StemCell Technologies, Vancouver, BC, Canada) as recommended by the manufacturer. Briefly, 10 × 105 cells were suspended in ALDEFLUOR assay buffer containing an ALDH substrate (BODIPY-aminoacetaldehyde-diethyl acetate, BAAA-DA) and incubated at 37  °C for 45 min. A negative control for each sample was generated by incubation with the ALDH inhibitor diethylaminobenzaldehyde. Cells were washed with the ALDEFLUOR buffer and analyzed by flow cytometry in a flow cytometer (BD Biosciences, San Jose, CA, USA).
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8

Isolating HT-29 Colorectal Cancer Stem Cells

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Flow cytometry was used
to isolate the CD133+/CD44+ cells in the HT-29
cell line. A total of 1 × 106 cells/mL were labeled
by the incubation with 10 μL of CD133-PE and CD44-APC (Miltenyi
Biotec, Bergisch Gladbach) for 10 min at 4 °C. The CD133+/CD44+ subpopulation was then filtered and isolated
by a FACSAria II flow cytometer for CD133+/CD44+ markers to gain HT-29 CSCs.31 (link) HT-29 CSCs
were grown in HT-29 cell culture conditions.
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9

Flow Cytometry Analysis of Stem Cell Markers

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50 000 viable B16-F10 cells (trypan blue exclusion test) dissociated from one-week-old tumorspheres or from trypsinized adherent monolayers were incubated for 30 minutes at 4°C in the dark with 0.5 µg of rat anti-mouse monoclonal CD133-APC, CD44-FITC or CD24-PE antibodies (eBiosciences, Paris, France) in 100 µL of a buffer solution consisting in PBS containing 3% bovine serum albumin (Sigma). Immunostaining was also performed for HT-29, MCF-7 and MDA-MB-231 cell lines using mouse anti-human monoclonal CD133-APC, CD44-PE, CD44-APC or CD24-FITC antibodies (Miltenyi Biotec, Paris, France) according to the manufacturer’s instructions. Cells were then washed and analyzed with an Accuri C6 flow cytometer (BD biosciences, USA).
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10

Immunophenotyping and Cell Cycle Analysis

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Cells were detached with trypsin, fixed with 4% PAF for 10min and then washed twice with PBS. Cells were re-suspended in PBS with 0.5% FBS. Cells were labeled with the following anti-human antibodies: CD105-APC, CD73-APC, CD90-APC, CD44-APC, CD34-APC, and CD31-APC (Miltenyi), CD45-APC (Becton Dickinson) for immunophenotyping assays; CD49a-APC and CD49d-APC (Miltenyi), CD106-APC and CD54-APC (Becton Dickinson) for adherence assays; Rabbit anti-p21, Mouse anti-p27, Mouse anti-Cyclin B1, Rabbit anti-Cyclin D1 (all from Cell Signaling), and Rabbit anti-p19 (Upstate) for cell cycle assays. Donkey anti-Mouse IgG DyLight650 and Donkey anti-Rabbit IgG DyLight650 (1:200 dilution for each, Thermo Scientific) were used as secondary antibodies when needed. Isotype antibodies served as respective controls. For intracellular labeling, cells were permeabilized with PBS/0.1% Triton X100 solution (BioRad). Cells were acquired on a FACS Scan flow cytometry analyzer (FACs Calibur, Becton Dickinson) and analyzed using CellQuestPro software (Becton Dickinson).
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