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15 protocols using decma 1

1

Immunofluorescence Staining of Cell-Cell Junctions

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The following primary antibodies were used for indirect immunofluorescence staining: mouse anti-E-cadherin (1:250, clone 36, BD Biosciences) was used for immunofluorescence staining in Figs 1, 2a and 3 and, Supplementary Figs 1, 4 and 7, rat anti-E-cadherin (1:250, DECMA-1 from Sigma Aldrich was used for immunofluorescence staining in Fig. 2b and Supplementary Fig. 7, rabbit anti-β-catenin (1:400, Abcam), mouse anti-β-catenin (clone 14, 1:250, BD Biosciences), rabbit anti-Transferrin Receptor (1:100, Abcam), rabbit anti-α-catenin (1:250, BD Sigma), mouse anti-α-tubulin (1:500, Sigma Aldrich). The following secondary antibodies were used for indirect immunofluorescence staining: Alexa Fluor 488 conjugated goat anti-rabbit (1:500, Life Technologies), Cy5 conjugated goat anti-rabbit (1:500, Life Technologies), Cy3 conjugated goat anti-mouse (1:500, Life Technologies), CF640 conjugated goat anti-rat (1:500, Life Technologies). Additionally, for staining F-actin either Alex Fluor 488 or Rhodamine conjugated Phalloidin (1:150, Life Technologies) was used.
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2

Anchorage-Independent Growth Assay

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To measure anchorage-independent growth, MCF7-RUNX2 Tet.OFF cells were grown in the presence (+Dox, RUNX2 negative) or absence (−Dox, RUNX2 positive) of doxycycline for 3 days. Cells were then scraped and counted. 60,000 cells were plated in each well of a 6-well ultra-low attachment plate (Corning; #3471) in Promocell Basal Medium (Promocell; c-22211) complete with Supplement Mix (Promocell; c-39216). Cells were treated with or without 2 ng/mL TGFβ (R&D Systems; #240-B-002). After growth for 10–15 days, cells were photographed and tumorsphere diameters were measured from photographic images (mm). Colony diameters were calculated using the formula: (L+W)/2. Representative photographs were obtained at 4X magnification. Other treatments included: 50 μM CADD522 (ChemBridge Corporation; 5221975), 20 μg/mL DECMA-1 (Sigma-Aldrich; U3254), 10 μg/mL Herceptin (University of Maryland Marlene and Stuart Greenebaum Cancer Center) replenished every 2–3 days, and 1 μM Lapatinib (gift from Dr. Anne Hamburger at the University of Maryland, Baltimore). For TAZ siRNA knockdown experiments, TAZ siRNA was transfected (as below) into MCF7-RUNX2 Tet.OFF cells and 24 hr later cells were scraped and placed into suspension as described above.
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3

Modulating Aneurysm Development and Rupture

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Separate studies were performed to test the effect of the following on aneurysm formation and/or aneurysm rupture: (1) IL‐17 blockade; (2) combined blockade of Il‐17 and E‐cadherin; and (3) E‐cadherin blockade. To study the effect on aneurysm formation, antagonist was given 48 hours pre‐elastase and every 48 hours for 3 weeks postelastase. To study the effect on aneurysm rupture, antagonist was given 1 week postelastase every 48 hours for up to 5 weeks.
Mice designated to receive IL‐17 blockade were given subcutaneous rat anti‐mouse IL17 antibody (R&D Systems; MAB421) or isotype‐matched Ig control (rat IgG2A [R&D Systems; MAB006]; 15 μg/animal) every 48 hours (15 μg/animal).
Mice designated to receive IL‐17 and E‐cadherin combined blockade were given rat anti‐mouse IL‐17 antibody and E‐cadherin–blocking antibody (Sigma‐Aldrich; DECMA‐1) or rat anti‐mouse IL‐17 antibody and isotype‐matched Ig control (rat IgG1 [R&D Systems; MAB005]) (15 μg/animal each) every 48 hours (15 μg/animal each).
Mice designated to receive E‐cadherin blockade were given E‐cadherin–blocking antibody (Sigma‐Aldrich; DECMA‐1) or isotype‐matched Ig control (rat IgG1 [R&D Systems; MAB005]; 15 μg/animal each) every 48 hours (15 μg/animal each).
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4

Comprehensive Antibody Characterization for Cell Signaling

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Anti-RHBDL2 and anti-E-cadherin antibodies were purchased from Proteintech (Rosemont, IL, USA). Anti-VE-cadherin (clone BV-9) and anti-HA (clone F-7) antibodies were supplied by Santa Cruz Biotechnology. EGFR phosphorylation was detected by a phospho-specific antibody (directed against p-Tyr1068) from Abcam (Cambridge, UK). The total and phosphorylated forms of p44/42 MAPK(Erk1/2) and AKT (against pAKT-S473 and pMAPK-Thr202/Tyr204) were detected with antibodies from Cell Signaling Technology (Danvers, MA, USA). Other antibodies that were applied in this study were: for Western Blotting, anti-vinculin (Sigma), anti-N-cadherin (Abcam), anti-Thrombomodulin (D-3, Santa Cruz Biotechnology, Dallas, CA, USA), and anti-RFP (Rockland Immunochemicals Inc., Limerick, PA, USA), for immunofluorescence anti-E-cadherin (clone 36/E, BD Transduction Laboratories) and anti-VE-cadherin (clone F-8, Santa Cruz Biotechnology). The secondary antibodies were purchased from Jackson Laboratories (Bar Harbor, ME, USA). The E-cadherin function-blocking antibody DECMA-1 was purchased from Sigma Aldrich. Santa Cruz Biotechnology supplied the IKK inhibitor IKK-16, while the metalloproteases inhibitors BB94 and Marimastat and the serine protease inhibitor 3,4-dichloroisocoumarin (DCI) were from Sigma. Human recombinant TNFα was purchased from Peprotech (Rocky Hill, NJ, USA).
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5

Immunofluorescence Staining of Cell-Cell and Focal Adhesions

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Samples were fixed with 4% paraformaldehyde (Thermo Fischer Scientific, Waltham, MA, USA) for 10 mins and permeabilized with 0.5% Triton-X for 5 mins. Cells were then blocked with 1% BSA/PBS and incubated with primary antibody overnight. Cells were incubated in secondary antibody for 1 hour and then mounted on another glass coverslip using Mowiol 40-88 (Sigma-Aldrich). For immunostaining, the following primary antibodies were used, E-cadherin (24E10- Cell Signaling Technology; DECMA1- Sigma Aldrich, ECCD2, Takara Bio) (1:100) and paxillin (Abcam, Ab32084) (1:100) vinculin was a gift from Glukhova lab (1:2). Anti-mouse, anti-rat, and anti-rabbit secondary antibodies conjugated with Alexa (488 or 568) (used at 1:200 dilution), phalloidin (1:20) were purchased from Life Technologies and Hoechst (Thermo Fisher, 1:10000). The fixation was slightly altered to stain vinculin at cell–cell junctions and focal adhesions. Cells were fixed with a mix of 4% PFA and 0.5% Triton-X 100 for 90 seconds, followed by fixation with 4% PFA for 10 min.
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6

Adherens Junction Disassembly Assay

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To disassemble the adherens junctions in monolayers, the cells were incubated with DMEM (no serum or antibiotics) containing 4 mM EGTA for 1 hour at 37 °C, 95% humidity and 5% CO2. Cells were then returned to regular growth media (calcium repletion) and fixed at various time points of the calcium switch experiment (steady state, low calcium, 1, 2 and 3 hours after calcium repletion). For live-cell microscopy, imaging was performed after returning the cells to regular growth media composed of: FluoroBrite DMEM (Life Technologies), FBS (10% v/v), penicillin (100 I.U./mL), streptomycin (100 μg/mL), OxyFluor (1% v/v, Oxyrase) and Sodium dl – Lactate (20 mM, Sigma Aldrich). For fixed cells and live cell imaging E-cadherin function blocking antibody (100 μg/ml, DECMA-1, Sigma Aldrich) was added during calcium repletion.
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7

E-cadherin Quantification by Flow Cytometry

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Flow cytometry measurements quantified the density of cadherins on cell surfaces (cadherins/µm2). E-cadherin expressing cells were labeled with the primary, anti-E-cadherin antibody DECMA-1 (Sigma-Aldrich, St. Louis, MO), which binds the fifth extracellular repeat domain (EC5) of murine and human E-cadherin [57 (link)]. The secondary antibody was CFL-647 -conjugated anti-rat IgG (whole antibody, Santa Cruz Biotech, TX). The antibody labeling was done in 1X PBS containing 1 w/v% BSA at pH 7.4. The fluorescence intensities of labeled cells were measured with an LSR II flow cytometer (BD Biosciences). The calibration curve used to relate the fluorescence intensity to the cadherin surface density was generated with calibrated Alexa 647-labeled standard beads (Bangs Laboratories, Fishers, IN).
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8

Immunofluorescence and Western Blot Analysis

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The following primary antibodies were used: monoclonal antibody DECMA-1 (U3254, Sigma-Aldrich), rabbit polyclonal anti–phospho-paxillin [Immunofluorescence (IF): 1:200; 2541S, Cell Signaling Technology], rabbit polyclonal anti-paxillin (IF: 1:200; 2542S, Cell Signaling Technology), p44/42 mitogen-activated protein kinase (MAPK) (ERK1/2) antibody [Western blot (WB): 1:1000; 9102, Cell Signaling Technology], phospho-p44/42
MAPK (ERK1/2) antibody (WB: 1:1000; 9101, Cell Signaling Technology), S6 ribosomal protein (Ser235/236) antibody (WB: 1:1000; 2317, Cell Signaling Technology), and phospho-S6 ribosomal protein (Ser235/236) antibody (WB: 1:1000; 2211, Cell Signaling Technology).
Secondary antibodies were chicken anti-rabbit Alexa Fluor 647 (1:400; Thermo Fisher Scientific, A-21443), donkey anti-mouse Alexa Fluor 555 (1:400; Thermo Fisher Scientific, A-32773), anti-rabbit immunoglobulin G (IgG) horseradish peroxidase (HRP)–linked (1:2000; Cell Signaling Technology, 7074), and anti-mouse IgG HRP-linked (1:2000; Cell Signaling Technology, 7076). 4′,6-Diamidino-2-phenylindole (DAPI) was added at 1 μg/ml during a washing step. Mitomycin drug (Sigma-Aldrich, M4287) was used at 25 μg/ml.
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9

Therapeutic Agents for Breast Cancer

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Torin 1 (S2827, Selleckchem), PD98059 (A1663, ApexBio) and danusertib (A4116, ApexBio) were injected via intraperitoneal (i.p.) injection, daily, at the dosage of 6.8, 10 and 15 mg kg−1, respectively. EPZ6438 (A8221, ApexBio) was injected via i.p. injection once every 2 days at 50 mg kg−1. For antibody therapy, 4 mg kg−1 DECMA-1 (U3254; Sigma) or rat immunoglobulin G (I4131; Sigma) was injected via i.p.injection twice a week. In the experiments using MCF-7 cells, oestradiol pellets were prepared and transplanted into nude mice before cancer cell injection, according to a previously published protocol50 (link), unless otherwise noted.
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10

Culturing A549 Lung Cancer Cells

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The lung cancer cell line A549 was purchased from the American Type Culture Collection (Manassas, VA, USA) and cultured in DMEM (Gibco Invitrogen, Paisley, Scotland) with 10% fetal bovine serum (FBS, BI), 100 U/ml penicillin, and 100 μg/ml streptomycin. (Gibco, USA) at 37°C in a 5% CO2 atmosphere. Trypsin (0.25%, Gibco, USA) was used to passage the cell lines when they reached 90% confluence. The reagents used for cell disposes included recombinant human E-cadherin (rmE-cad) (R&D, Minneapolis, MN), curcumin and the E-cadherin ectodomain-blocking antibody DECMA-1 (Sigma, USA).
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