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505 protocols using xbridge c18

1

Synthesis of 8-Isopropyl Triazolopyridine Derivative

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Example 95

To a solution of tert-butyl 4-(3-isopropyl-2-(8-isopropyl-[1,2,4]triazolo[1,5-a]pyridin-6-yl)-1H-indol-5-yl)piperidine-1-carboxylate (140 mg, 0.279 mmol) in DCM (10 mL) was added 4 M HCl in dioxane (5 mL) at ambient temperature. The mixture was stirred at the same temperature for 1 h. The solution was concentrated to afford crude product. The crude sample was purified by preparative LCMS with the following conditions: Waters Xbridge C18, 19×150 mm, 5 m; Guard Column: Waters Xbridge C18, 19×10 mm, 5 μm; Mobile Phase A: 5:95 Methanol:water with 10 mM NH4OAc; Mobile Phase B: 95:5 Methanol:water with 10 mM NH4OAc; Gradient: 15-65% B over 25 minutes, followed by a 10 minute hold at 65% B and 5 minute hold at 100% B; Flow: 15 mL/min. Fractions containing the product were combined and dried using a Genevac centrifugal evaporator to provide 8-isopropyl-6-(3-isopropyl-5-(piperidin-4-yl)-1H-indol-2-yl)-[1,2,4]triazolo[1,5-a]pyridine (1.5 mg, 1.3%) as a white solid. LC retention time=1.49 min [E]. MS (E) m/z: 402 (M+H).

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2

Synthesis of 8-Ethyl-6-(3-Isopropyl-5-(Piperidin-4-yl)-1H-Indol-2-yl)-[1,2,4]Triazolo[1,5-a]Pyridine

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Example 94

To a solution of tert-butyl 4-(2-(8-ethyl-[1,2,4]triazolo[1,5-a]pyridin-6-yl)-3-isopropyl-1H-indol-5-yl)piperidine-1-carboxylate (140 mg, 0.287 mmol) in DCM (10 mL) was added 4 M HCl in dioxane (3.05 μl, 0.100 mmol at ambient temperature. The mixture was stirred at the same temperature for 1 h. The solution was concentrated to afford crude product. The crude material was purified by prep LCMS with the following conditions: Waters Xbridge C18, 19×150 mm, 5 μm; Guard Column: Waters Xbridge C18, 19×10 mm, 5 μm; Mobile Phase A: 5:95 methanol:water with 10 mM NH4OAc; Mobile Phase B: 95:5 methanol:water with 10 mM NH4OAc; Gradient: 15-65% B over 25 minutes, followed by a 10 minute hold at 65% B and 5 minute hold at 100% B; Flow: 15 mL/min. Fractions containing the product were combined and dried using a Genevac centrifugal evaporator to provide 8-ethyl-6-(3-isopropyl-5-(piperidin-4-yl)-1H-indol-2-yl)-[1,2,4]triazolo[1,5-a]pyridine (5.4 mg, 8.5%) as a white solid. LC retention time=1.38 min [E]. MS (E) m/z: 388 (M+H).

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3

Synthesis of (R)-N-(3-isopropyl-2-(1H-pyrazolo[3,4-b]pyridin-4-yl)-1H-indol-5-yl)pyrrolidine-3-carboxamide

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Example 9

To a solution of (R)-tert-butyl 3-((3-isopropyl-2-(1H-pyrazolo[3,4-b]pyridin-4-yl)-1H-indol-5-yl)carbamoyl)pyrrolidine-1-carboxylate (0.03 g, 0.061 mmol) in DCM (2 mL) was added 4 M hydrochloric acid in dioxane (0.090 mL, 0.368 mmol) at room temperature. The reaction mixture was stirred at the same temperature for 1 h. The reaction mass was concentrated to get crude product. The product was purified by prep LCMS with the following conditions: Waters Xbridge C18, 19×150 mm, 5 μm; Guard Column: Waters Xbridge C18, 19×10 mm, 5 μm; Mobile Phase A:5:95 methanol:water with 10 mM NH4OAc; Mobile Phase B: 95:5 methanol:water with 10 mM NH4OAc; Gradient:15-65% B over 25 minutes, followed by a 10 minute hold at 65% B and 5 minute hold at 100% B; Flow:15 ml/min. The fraction was collected, concentrated and lyophilized to afford (R)—N-(3-isopropyl-2-(1H-pyrazolo[3,4-b]pyridin-4-yl)-1H-indol-5-yl)pyrrolidine-3-carboxamide (4.5 mg, 19%) as a pale yellow solid. LCMS retention time 1.14 min [C1]. MS m/z: 389.1 (M+H); 1H NMR (400 MHz, DMSO-d6) δ ppm 13.80 (br. s., 1H), 11.27 (s, 1H), 10.09 (s, 1H), 8.65-8.56 (m, 1H), 8.26 (d, J=1.5 Hz, 1H), 8.18-8.11 (m, 1H), 7.42-7.28 (m, 2H), 7.22 (d, J=4.5 Hz, 1H), 3.27-3.14 (m, 4H), 2.89 (s, 1H), 2.28-2.19 (m, 2H), 2.15-2.05 (m, 1H), 1.51-1.39 (m, 6H).

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4

Synthesis of 2-(3-(5'-Chloro-2'-Hydroxy-3'-(2-Methylallyl)-[1,1'-Biphenyl]-4-yl)Cyclobutoxy)Acetic Acid

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Example 24

A solution of cis-2-(3-(5′-chloro-2′-hydroxy-3′-(2-methylallyl)-[1,1′-biphenyl]-4-yl)cyclobutoxy)acetic acid (40 mg, 0.10 mmol) in formic acid (0.5 mL) and water (0.05 mL) was heated at 110° C. for 30 h. Volatiles were removed in vacuo and the residue was azeotroped with toluene. The crude product was purified by preparative LC/MS using the following conditions: Column: Waters XBridge C18, 19×200 mm, 5-μm particles; Guard Column: Waters XBridge C18, 19×10 mm, 5-μm particles; Mobile Phase A: 5:95 MeCN:H2O with 0.1% TFA; Mobile Phase B: 95:5 MeCN:H2O with 0.1% TFA; Gradient: 50-90% B over 20 min, then a 5-min hold at 100% B; Flow: 20 mL/min. Fractions containing the desired product were combined and dried via centrifugal evaporation to provide the title compound (14 mg, 0.04 mmol, 35% yield). LCMS, [M−H]+=385.1. 1H NMR (500 M Hz, DMSO-d6) δ 7.60 (d, J=7.7 Hz, 2H), 7.32-7.25 (m, 3H), 7.21 (s, 1H), 4.04 (quin, J=7.2 Hz, 1H), 3.92 (s, 2H), 3.06 (s, 2H), 2.98 (quin, J=8.8 Hz, 1H), 2.67-2.57 (m, 2H), 2.00-1.89 (m, 2H), 1.43 (s, 6H). HPLC-4: RT=1.76 min; HPLC-5: RT=2.30 min; purity=99%.

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5

Silver-Mediated Diazo Rearrangement Procedure

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Example 46

To a solution of cis-1-diazo-3-(3-(2′-fluoro-5′-isopropoxy-[1,1′-biphenyl]-4-yl)cyclobutyl) propan-2-one (6 mg, 0.02 mmol) in THF (0.6 mL) and water (0.3 mL) was added AgNO3 (3 mg, 0.02 mmol). The yellow/green solution was stirred overnight, then was concentrated in vacuo to remove the THF. The resulting slurry was partitioned between H2O and CH2Cl2. The aqueous layer was extracted with CH2Cl2 (5×10 mL). The combined organic extracts were washed with brine (5 mL), dried (MgSO4) and concentrated in vacuo. The residue was purified by preparative LC/MS using the following conditions: Column: Waters XBridge C18, 19×200 mm, 5-μm particles; Guard Column: Waters XBridge C18, 19×10 mm, 5-μm particles; Mobile Phase A: 5:95 MeCN:H2O with 0.1% TFA; Mobile Phase B: 95:5 MeCN:H2O with 0.1% TFA; Gradient: 50-90% B over 20 min, then a 5-min hold at 100% B; Flow: 20 mL/min. Fractions containing the desired product were combined and dried via centrifugal evaporation to provide the desired product (4 mg, 10.89 μmol, 67% yield). LCMS, [M−H]+=355.2. 1H NMR (500M Hz, DMSO-d6) δ 7.46 (d, J=7.2 Hz, 2H), 7.30 (d, J=7.4 Hz, 2H), 7.18 (t, J=9.6 Hz, 1H), 6.99-6.87 (m, 2H), 4.67-4.57 (m, 1H), 2.47-2.39 (m, 3H), 2.27-2.10 (m, 3H), 1.73-1.58 (m, 4H), 1.26 (d, J=5.8 Hz, 6H). HPLC-4: RT=2.08 min; HPLC-5: RT=2.34 min; purity=97%.

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6

Microwave-Assisted Hydrolysis and Purification

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EXAMPLE 84

To the above crude reaction mixture was added MeOH (0.5 mL), water (0.5 mL) and LiOH.H2O (17 mg, 0.7 mmol). The mixture was heated to 100° C. for 30 min in a microwave reactor, then was cooled to rt and concentrated in vacuo. The residue was acidified with 1N aq. HCl to pH=2-3, then was extracted with EtOAc (3×5 mL). The combined organic extracts were dried over MgSO4 and concentrated in vacuo. The crude product was purified via preparative LC/MS with the following conditions: Column: Waters XBridge C18, 19×100 mm, 5-μm particles; Guard Column: Waters XBridge C18, 19×10 mm, 5-am particles; Mobile Phase A: 5:95 MeCN:water with 0.1% TFA; Mobile Phase B: 95:5 MeCN:water with 0.1% TFA; Gradient: 20-60% B over 30 min, then a 5-min hold at 100% B; Flow: 20 mL/min. Fractions containing the desired product were combined and dried via centrifugal evaporation to afford the title compound (8 mg, 62% yield). LCMS, [M+H]+=363.2. 1H NMR (500 MHz, DMSO-d6) δ 7.93 (d, J=3.2 Hz, 1H), 7.37-7.25 (m, 7H), 6.94 (d, J=8.1 Hz, 2H), 5.22 (s, 2H), 3.99 (dt, J=9.8, 4.1 Hz, 1H), 3.88-3.77 (m, 1H), 2.25 (d, J=3.0 Hz, 3H), 1.70 (s, 1H), 1.60 (h, J=4.0 Hz, 1H), 1.08 (dq, J=8.3, 4.1 Hz, 1H), 0.96 (dt, J=8.7, 4.5 Hz, 1H). HPLC-4: RT=1.32 min, purity=99%; HPLC-5: RT=1.61 min, purity=99%.

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7

Radiolabeling of 4-amino-3-hydroxypyridine

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Supplemental table 1 shows a summary of the conditions tested during development. Final method: 4-amino-3-hydroxypyridine (1, 2 ± 0.5 mg) was dissolved in 0.3 mL of DMSO and 4 μL of 8 N NaOH added to it. [11C]CH3I (7.4-22.2 GBq) produced in the GE Tracerlab FX MeI was bubbled into the precursor solution, sealed and allowed to react at 80 °C for 3 minutes. The reaction mixture was diluted with 5 mL of water and purified using reverse-phase HPLC (Waters XBridge C18; 5 μm, 10x250 mm; 5% EtOH in 95% sodium phosphate (10 mM, pH = 8); Flow: 3 mL/min; Rt ~9.3 min) or by Sep-pak purification. For Sep-pak purification the reaction mixture was diluted with 20 mL of water, loaded onto a C18 cartridge (Waters) eluted with 10% EtOH in saline. Molar activity, chemical and radiochemical purity were assessed by analytical HPLC (Waters XBridge C18; 3.5u, 4.6 x 100 mm; 5% MeCN in 95% ammonium bicarbonate (10 mM); Flow: 1 mL/min; Rt ~5 min). Compound identity was confirmed by coinjection with authentic reference standard on HPLC.
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8

Synthesis of 8-Isopropyl-6-Indole Triazolopyridine

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Example 95

To a solution of tert-butyl 4-(3-isopropyl-2-(8-isopropyl-[1,2,4]triazolo[1,5-a]pyridin-6-yl)-1H-indol-5-yl)piperidin e-1-carboxylate (140 mg, 0.279 mmol) in DCM (10 mL) was added 4 M HCl in dioxane (5 mL) at ambient temperature. The mixture was stirred at the same temperature for 1 h. The solution was concentrated to afford crude product. The crude sample was purified by preparative LCMS with the following conditions: Waters Xbridge C18, 19×150 mm, 5 μm; Guard Column: Waters Xbridge C18, 19×10 mm, 5 μm; Mobile Phase A:5:95 Methanol:water with 10 mM NH4OAc; Mobile Phase B: 95:5 Methanol:water with 10 mM NH4OAc; Gradient: 15-65% B over 25 minutes, followed by a 10 minute hold at 65% B and 5 minute hold at 100% B; Flow: 15 mL/min. Fractions containing the product were combined and dried using a Genevac centrifugal evaporator to provide 8-isopropyl-6-(3-isopropyl-5-(piperidin-4-yl)-1H-indol-2-yl)-[1,2,4]triazolo[1,5-a]pyridine (1.5 mg, 1.3%) as a white solid. LC retention time=1.49 min [E]. MS (E) m/z: 402 (M+H).

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9

Palladium-Catalyzed Cross-Coupling Synthesis

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Example 39

A mixture of trans-2-(3-(4-bromophenyl)cyclobutoxy)acetic acid (15 mg, 0.05 mmol), (2-fluoro-5-phenoxyphenyl)boronic acid (18 mg, 0.08 mmol), (Ph3P)4Pd (6 mg, 5.26 μmol) and K2CO3 (22 mg, 0.16 mmol) in THF (2 mL) and water (0.7 mL) was heated in a microwave reactor at 130° C. for 20 min under Ar, then was cooled to rt. The reaction was acidified with 1N aq. HCl to pH=2-3, and extracted with EtOAc (4×10 mL). The combined organic extracts were dried (MgSO4) and concentrated in vacuo. The residue was purified by preparative LC/MS using the following conditions: Column: Waters XBridge C18, 19×200 mm, 5-μm particles; Guard Column: Waters XBridge C18, 19×10 mm, 5-μm particles; Mobile Phase A: 5:95 MeCN:H2O with 0.1% TFA; Mobile Phase B: 95:5 MeCN:H2O with 0.1% TFA; Gradient: 50-90% B over 20 min, then a 5 min hold at 100% B; Flow: 20 mL/min. Fractions containing the desired product were combined and dried via centrifugal evaporation to provide the title compound (12 mg, 0.03 mmol, 54% yield). LCMS, [M−H]+=391.1. 1H NMR (500 MHz, DMSO-d6) δ 7.48 (d, J=7.7 Hz, 2H), 7.42-7.30 (m, 5H), 7.17-7.12 (m, 2H), 7.08-7.00 (m, 3H), 4.29-4.21 (m, 1H), 3.92 (s, 2H), 3.61-3.52 (m, 1H), 2.46-2.28 (m, 4H). HPLC-4: RT=1.74 min; HPLC-5: RT=2.26 min; purity=96%.

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10

Isolation and Purification of Compounds 1 and 2

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To prepare compounds 1 and 2 for structural elucidation, 24 L fermentation broth of LHW50302 was extracted three times with equal volume of ethyl acetate (0.1% formic acid, v/v). The combined organic phases were degreased with hexane and concentrated under vacuum to yield 15 g syrup extract. The extract was subjected to a vacuum liquid chromatography column loaded with silica gel (200–300 mesh) using a stepwise elution with CH2Cl2/MeOH (1:1, v/v) to afford five fractions (Fr. B1-B5). Guided by HPLC–MS analysis, the B3 fraction (1 g) was selected for further separation by using medium-pressure preparative liquid chromatography (MPLC) equipped with an ODS chromatography column (Santai Technologies, Inc., Spherical C18, 20–45 μm, 100 Å) in an elution condition of 15 mL/min and 10–100% MeOH/H2O (0.1% formic acid, v/v) for 3 h to afford sixteen subfractions (Fr. B3A-B3P). Then the fraction B3K (250 mg) was further separated over HPLC (Waters Xbridge C18, 10 × 250 mm, 3.0 mL/min, 35% MeOH/H2O) to to yield 2 mg of 1a, 4 mg of 1b as well as B3L (33 mg) was purified with HPLC (Waters Xbridge C18, 10 × 250 mm, 3.0 mL/min, 29% CH3CN/H2O) to obtain 1 mg of 2a and 2 mg of 2b.
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