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10 protocols using fcr blocking agent

1

Endothelial Cell Enrichment Protocol

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Zeocin selection

On day 14, differentiating cells were placed under antibiotic selection in endothelial cell media (R&D systems) containing 25 ng/ml of Zeocin (Thermo Fisher Scientific) for 48 h.
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CD31 microbead MACS sort

Alternatively, on day 14, differentiating cells can be positively enriched for CD31-positive endothelial cells using CD31 MACS microbeads. Single cell suspensions were prepared using TrypLE (Thermo Fisher Scientific). Cells were pelleted by centrifugation and resuspended in PBS to a final concentration of 1 × 107 cell/ml. Twenty microliters of FCR blocking agent (Miltenyi Biotech) was added per 60 μl of cells as per the manufacturer’s instructions, followed by 20 μl of CD31 beads (Miltenyi Biotech) per 60 μl of cells. Cells were incubated with the CD31 beads at 4 °C for 15 min with gentle shaking. One milliliter of PBS was added to the cell-bead suspension which was then pelleted by centrifugation. The pellet was resuspended in 1 ml of PBS containing 0.04% non-acetylated BSA. Cells were sorted on an autoMACS sorter using the selection program “possel.” The positive fraction was plated into one well of a 6-well plate pre-coated with Matrigel and maintained in endothelial cell media (R&D systems).
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2

Immunohistochemical Analysis of Lung Cells

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The lung sections were pretreated with 1:10 FcR blocking agent (Miltenyi Biotech, Gladbach, Germany) for 10 min. They were then treated with primary antibodies (1:100 dilution) as follows: goat anti-proSP-C polyclonal antibody (sc-7706; Santa Cruz Biotech, Dallas, TX, USA), rabbit anti-p38 polyclonal antibody (original production [66 (link)]), rabbit anti-proSP-C antibody (customized production [60 (link)]; Sigma-Aldrich Japan Genosys, Ishikari, Japan), and mouse anti-phospho-p38 MAPK (pT180/pY182) (clone30, 612281; BD Biosciences, NJ, USA), followed by staining with appropriate fluorescein-conjugated secondary antibodies (1:200 dilution), and 4′,6-diamidino-2-phenylindole (DAPI) was used for nuclear staining. The stained sections were observed under a fluorescence microscope (Axio Imager A2; Zeiss, Oberkochen, Germany).
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Isolation and Characterization of Lung Endothelial Cells

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The second generation of lung endothelial cells was digested with trypsin solution and repeatedly blown to the cell suspension. After washing with PBS, cells were incubated with FcR blocking agent (Miltenyi, Germany) for 10 min at 4 °C. Then, cells were incubated with VE-cadherin (Miltenyi, Germany) for 30 min on ice, followed by 30 min secondary antibody incubation with PBS washing between the incubation periods. Samples were run on the FACScan flow cytometer(Miltenyi, Germany). Analyses were performed using FlowJo software. Surface antigen levels were expressed as the mean fluorescence intensity of cells.
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4

Lung Tissue Analysis of Mice at COVID-19 Timepoints

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Mice were sacrificed at 3 or 8 dpi, and the lung lobes were fixed, dehydrated and frozen. Freshly cut lung sections (5 μm thickness) placed on poly-L-lysine-coated slides were pretreated with 1:10 FcR blocking agent (Miltenyi Biotech, Gladbach, Germany) for 10 min and reacted with various antibodies as follows: goat anti-prosurfactant protein (proSP)-C antibody (Santa Cruz Biotech., Santa Cruz, CA), rabbit anti-phospho-Stat3 (Cell Signaling Technology), rabbit anti-phospho-Akt antibody (Cell Signaling Technology), rabbit anti-Iba 1 antibody (WAKO, Osaka, Japan), rat anti-mouse IL-6 antibody (Biolegend, San Diego, CA), rabbit anti-S100A4 antibody (Abcam, Cambridge, UK) or mouse anti-smooth muscle α-actin/SMA (Sigma-Aldrich, St. Louis, MO). After staining with each appropriate fluorescein-conjugated second antibody, the sections were observed under a fluorescence microscope (Axio Imager A2, Zeiss, Oberkochen, Germany). Nuclei were stained with 4’6’-diamino-2-phenylindole (DAPI).
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5

Isolation of Cerebral Endothelial Cells

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The physicians used real-time X-ray technology to visualize the patient’s vascular system and locate IA inside the blood vessel. A solitaire stent retriever (Covidien, Irvine, CA, United States) was used for biopsy specimens’ retrieval from an occluded IA. Cerebral aneurysm and malformed arteries were isolated from cerebral arties using a cutting plane and separating the surfaces on either side of the plane by using a minimally invasive technique. Endothelial cells were derived from human cerebral aneurysm and malformed arteries, and separated with immunomagnetic cell sorting. Briefly, Anti-CD 146-coated Dynabeads (Invitrogen, CA, United States) were prepared according to manufacturer’s instruction and stored at 4°C. Fifty-mg aneurysms were ground with glass pestle and mortar with one-millilter PBS buffer, 0.1% bovine serum albumin, 0.1% sodium azide, and 0.1% a standard broad-spectrum inhibitor cocktail at 4°C. Ten-microliter FcR-blocking agent (Miltenyi, Bergisch Gladbach, Germany) and 25-microliter antibody-coated Dynabeads were added and mixed thoroughly. The samples were mixed in a mixer for 1 h at 4°C and washed four times with PBS inside the Big Easy Magnet (EasySep, United States) at 4°C. Between each washing procedure, the endothelial cells were flushed out with MACS buffer (PBS with 0.5% BSA and 2 mM EDTA, pH 7.0) 10 times in a 100-μL pipette.
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Identifying Prostate Cancer Stem Cells

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Cells from LNCaP xenograft tumors were incubated with a FcR blocking agent (Miltenyi Biotec, San Diego, CA, US) for 15 min at 4 °C and were then stained with CXCR4 antibody (BD, Biosciences, San Jose, CA, US) for 30 min on ice, followed by staining with APC-conjugated goat anti-mouse IgG (BD Biosciences) for 15 min on ice. Cells were then washed thrice and stained with PE conjugated anti-CD44 antibody (BD Bioscience) and PE-cy7 conjugated anti-CD24 (BD Biosciences) for 20 min. After washing with PBS, cells were incubated in a solution containing 1% bovine serum albumin (BSA) (Sigma-Aldrich) and 2.5 μg/ml insulin (Sigma-Aldrich). Then, the cells were suspended in an ALDEFLUOR assay buffer containing ALDH substrate (STEMCELL Technologies China Co., Ltd., Shanghai, China). After incubating at 37 °C for 40 min, cells were sorted by fluorescence-activated cell sorting (FACS).
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7

Immunofluorescent Analysis of Lung Inflammatory Cells

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Freshly cut lung sections (5 µm thickness) from mice at 1 dpi were pretreated with FcR blocking agent (Miltenyi Biotec, Gladbach, Germany) for 15 min, and then reacted with various antibodies as follow: anti-mouse IL-6 antibody (Biolegend), anti-mouse IL-17A (Biolegend), anti-Iba1 antibody (WAKO, Osaka, Japan), anti-CD4 antibody (BIOSS ANTIBODIES, Boston, Massachusetts) and anti-mouse T-cell receptor (TCR)γδ antibody (Biolegend). After staining with each appropriate fluorescein-conjugated second antibody, the sections were observed under a fluorescence microscope (Axio ImagerA2, Zeiss, Oberkochen, Germany). Nuclei were stained with 4′, 6-diamidino-2-phenylindole (DAPI). In case of counting IL-6-, IL-17-, Iba1-, CD4 and TCRγδ-like immunoreactivity (LI), two sections from each lung were randomly selected and subjected to immunofluorescent studies. Under 200× magnification, 3 fields in each section were randomly chosen, and fluorescent signal-expressing cells were counted and averaged (/0.1 mm2).
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8

Phenotypic Characterization of hESC-MSCs

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The phenotype of hESC-MSCs was characterized using flow cytometry and the following monoclonal antibodies: anti-CD31-APC (Miltenyi Biotec), anti-CD44-FITC (BD Pharmingen), anti-CD45-FITC (BD Pharmingen), anti-CD73-APC (Miltenyi Biotec), anti-CD90-FITC (BD Pharmingen), anti-CD105-PE (eBioscience), HLA-ABC-APC (BD Pharmingen), and HLA-DR-FITC (BD Pharmingen). Briefly, the cells were dissociated and suspended in FACS buffer (1x PBS/0.5% BSA) and nonspecific binding blocked with FcR blocking agent (Miltenyi Biotec) for 10 minutes at 4°C. For labeling cell surface antigens, the cells were incubated with the abovementioned fluorescent conjugated antibodies for 10 minutes at 4°C. After antibody labeling, data was acquired using Dako Cytomation CyAn ADP and analyzed using FlowJo v7.6.5 (Tree Star).
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9

Flow Cytometric Analysis of PBMCs

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After thawing, PBMCs were stained using LIVE/DEAD fixable dead cell stain kit (Invitrogen) or 7-AAD (BD Biosciences) to gate out dead cells. The cells were washed and then incubated with FcR blocking agent (Miltenyi Biotec) for 10 min at 4 °C, followed by staining with fluorochrome-conjugated antibodies against surface markers for 30 min at 4 °C. For intracellular staining, cells were fixed and permeabilized using the FoxP3 staining buffer kit (Thermo Fisher Scientific), and then stained with fluorochrome-conjugated antibodies. All staining procedures were conducted in staining buffer, phosphate-buffered saline supplemented with 1% FBS and 0.05% sodium azide. Supplementary Table 2 lists the fluorochrome-conjugated antibodies used for flow cytometry. All flow cytometric analyses were performed using an LSR II instrument (BD Biosciences), and the data were analyzed with FlowJo software (Treestar).
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10

Analyzing Immune Cell Populations

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Specific markers of PBMCs and monocytes were labeled and analyzed by flow cytometry as we previously described.24 Briefly, after sterilization with alcohol, spleens were isolated from treated Balb/c mice. Subsequently, the spleen samples were at 70 μm by nylon cells mesh (BD Falcon, MA, USA). A red blood cell separation buffer (R&D Systems) was used to remove red blood cells. An FcR blocking agent (Miltenyi Biotec) was adapted to exclude nonspecific antibody combination in PBMCs and monocytes cell culture. Incubating together with the suitable antibody for half an hour at 4°, the cells were washed with FACS buffer and passed through a BD LSR II (BD Biosciences, San Diego, CA). The cells were incubated with anti‐CD4 FITC PerCP for 1 hour, subsequently being fixed and permeabilized by a fixation/permeabilization kit (BD Biosciences). Then, the cells were stained with anti‐Foxp3 and analyzed by flow cytometry. A FlowJo software (Tree Star) was used to collect and analyze the data.
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