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Cy3 conjugated anti rabbit antibody

Manufactured by Jackson ImmunoResearch
Sourced in United States

Cy3-conjugated anti-rabbit antibody is a laboratory reagent used for the detection and visualization of rabbit-derived proteins or antigens in various biological applications, such as Western blotting, immunohistochemistry, and flow cytometry. This antibody is conjugated to the fluorescent dye Cy3, which enables the labeling and identification of target proteins.

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11 protocols using cy3 conjugated anti rabbit antibody

1

Immunofluorescence Staining of MAP2 in Cells

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After fixation, cells were permeabilized with PBS containing 0.2% Triton X-100 for 10 min, then treated with PBS containing 0.2% Triton X-100 and 10% BSA as a blocking buffer for 2 h. Anti-MAP2 antibody (rabbit, 1:500, Cell signaling technology, ref. #4542) was incubated overnight at 4 °C in PBS containing 10% BSA. Cells were rinsed in PBS and incubated for 2 h with anti-rabbit CY3-conjugated antibody (1:200, Jackson Laboratories, ref. #711-165-152). Nuclei were stained with Hoechst 33342 and after washing twice in PBS, cells were mounted onto slides and imaged using a Keyence BZ-X700 microscope at 40X objective.
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2

Immunostaining of Embryonic and Wing Disc Samples

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Embryos, wing disc and cell immunostainings were carried out using standard protocols. Embryos were immunostained using the following primary antibodies: pMad212 1:500; pMad204/08 1:250; pMadCter 1:750; anti-Engrailed (4D9, Hybridoma bank) 1:10. Wing discs were immunostained using the following primary antibodies: pMadCter 1:1000 (E. Laufer, C. H. Heldin); anti-Omb 1:700; β-Gal (40 1a Hybridoma bank), 1:1000; anti-Flag rabbit (Sigma) 1:1000; anti-Flag mouse (Sigma) 1:1000. The following secondary antibodies (Jackson Laboratories) were used anti-mouse Cy3 conjugated antibody 1:1000, anti-mouse 488 conjugated antibody 1:1000, anti-rabbit Cy3 conjugated antibody 1:1000; anti-rabbit 488 conjugated antibody, 1:1000. All tissues were placed in DAPI-containing Vectashield (Vector) and mounted on glass slides. Fluorescent imaging was carried out using a Zeiss Apotome microscope and accompanying Zeiss software (pseudo-coloring). Wing imaginal discs and embryos were imaged at 10× magnification. Wing pouch images were taken at 20× magnification. S2 cells were imaged at 63× magnification.
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3

Transient Transfection of Lamin C Mutants

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Cells were grown on poly-lysine-treated coverslips in 6-well plates. Each laminC-GFP amber mutant plasmid was cotransfected with the amber suppressor plasmid as transient transfection by the PEI-method. For the laminC-GFP amber mutant screen two samples were prepared with or without addition of 1 mM pBPA. 24 h post transfection (p.t.) the medium was replaced by fresh medium with or without pBPA. For the lmnC-T534-3xFlag cdk1 mutants, only one dish with medium with 1 mM pBPA was required. For the GFP-constructs, cells were washed two times with PBS, fixed for 15 min at RT with 4% paraformaldehyde and permeabilized in 0.1% Triton X-100 in PBS for 15 min at RT. Cells were incubated for 15 min with PBS containing 1 μg/ml DAPI. The different lmnC-T534-3xFlag constructs were immune-stained by fixing the cells with 4% paraformaldehyde, blocking with blocking buffer (3% BSA, 0.2% Triton X-100 in PBS), incubation with the primary antibody against the Flag-tag (1:1000 rabbit, F7425 Sigma-Aldrich) in blocking buffer for 2 h at RT, then washing 3 times for 5 min in PBS followed by incubation with a secondary Cy3-conjugated anti-rabbit antibody (1:1000 Jackson Immuno Research, 111-165-144) and 1 μg/ml DAPI for 1 h at RT. Thereafter, the coverslips were dried, mounted and analyzed by LSM (Zeiss LSM800/510, 40x or ×63 oil objective).
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4

Immunostaining of Phosphorylated α-Synuclein in HeLa Cells

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Fixed HeLa cells were washed in phosphate-buffered saline (PBS), then incubated in PBS with 10% Block Ace (Yukizirushi, Tokyo, Japan) for 1 h and subsequently with primary anti-phosphorylated αSyn (pS129 αS) (1:1000; Abcam, Cambridge, UK) for 4 °C overnight. After several washes in PBS, the cells were incubated with Cy3-conjugated anti-rabbit antibody (Jackson ImmunoResearch, PA, USA) for 1 h at room temperature. After several washes in PBS, the cells were counterstained with Hoechst 34580 (Invitrogen).
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5

Quantifying Netrin-1 and Angiogenesis

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Immunohistochemistry was performed using primary rabbit anti-netrin-1 (Abcam, Cambridge, MA, USA) and anti-CD31 antibodies (Becton-Dickinson Biosciences, San Jose, CA, USA), followed by a secondary cy3-conjugated anti-rabbit antibody (Jackson ImmunoResearch Labs, West Grove, PA, USA). The quantification of the CD31+ area was performed using NIH ImageJ software, based on 5 slides that were 20 µm apart from each other. Five mice were analyzed in each group. ELISA for netrin-1 was performed with a human Netrin-1 ELISA kit (ABIN6958077, antibodies-online.com) according to the manufacturer’s instructions. The absorption was measured at 450 nm. The protein concentration was determined by comparing the relative absorbance of the samples with the standards.
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6

Immunofluorescence Detection of CD163 and CD206

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The primary antibodies used to detect CD163 and CD206 were CD163 (Abcam, ab156769) and CD206 (Abcam, ab125028), respectively. Cell nuclei were dyed using DAPI (Sigma, D9542). Alexa Fluor 488 conjugated anti‐mouse antibody (Jackson, 111‐545‐003) was used to detect CD163, and Cy3 conjugated anti‐rabbit antibody (Jackson, 705‐165‐003) was used to detect CD206. A Zeiss LSM510 laser confocal microscope was used to collect images.
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7

Detecting ASC Oligomer Cross-Linking

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For ASC oligomer cross-linking, cells were lysed in an A0 buffer (0.5% Triton × 100, 20 mM HEPES-KOH, pH 7.5, 150 mM KCl, and complete protease and phosphatase inhibitor cocktail) on ice by syringing 10 times through a G26 needle. The cell lysates were centrifuged at 6000 rpm at 4 °C for 10 min. Pellets were resuspended in PBS and crosslinked with disuccinimidyl suberate (DSS) (2 mM) (Thermo Scientific-Pierce, Rockford, IL, USA). The cross-linked pellets were centrifuged at 13000 rpm for 15 min and dissolved directly in a SDS sample buffer29 (link).
For ASC speck staining, inflammasome activated cells were fixed with 4% paraformaldehyde, permeabilized with acetone, and blocked with 10% horse serum. Cells were stained with ASC antibody (sc-22514-R, Santa Cruz)44 (link) and Cy3-conjugated anti-rabbit antibody (711-165-152, Jackson ImmunoResearch Lab)45 (link). Nuclei were counterstained with DAPI (Sigma-Aldrich)46 (link). All of the images were captured with a fluorescence microscope (Axio, Carl Zeiss).
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8

Immunofluorescence Staining of Respiratory Structures

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Primary antibodies used were mouse anti-NKX2-1 antibody diluted at 1:100 (LS Bio; Seattle, WA, USA), rabbit anti-SOX2 antibody diluted at 1:500 (Novus Biologicals; Littleton, CO, USA), rabbit anti-K8 antibody (LS Bio; Seattle, WA, USA) diluted at 1:250; mouse anti-p63 antibody (Santa Cruz Biotechnology; Dallas, Texas, USA) diluted at 1:200. Sections were incubated at 4 °C overnight. Secondary antibodies used were Cy3-conjugated anti-mouse antibodies (Jackson ImmunoResearch; West Grove, PA, USA) diluted at 1:200; FITC-conjugated anti-rabbit antibodies (Jackson ImmunoR-esearch; West Grove, PA, USA), diluted at 1:100 and applied 1 h at room temperature (RT). Slides were mounted using Vectashield (Vector Laboratories; Peterborough, UK). In case of whole mount IF staining, dissected respiratory structures were treated with rabbit anti-K8 antibody (LS Bio; Seattle, WA, USA) diluted at 1:250 overnight at RT and by secondary antibody Cy3-conjugated anti-rabbit antibody (Jackson ImmunoResearch; West Grove, PA, USA), diluted at 1:200, applied 4 °C/overnight. Slides were mounted using Vectashield (Vector Laboratories; Peterborough, UK).
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9

Kidney Explant Culture and YAP Overexpression

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Kidney rudiments were dissected from E11.5 mouse embryos and place on filters (Millipore, 0.5 mm pore size) in direct contact with DMEM medium supplemented with 10% heat-inactivated foetal bovine serum, 10% glutamine and 1% penicillin/streptomycin. After 24 or 48 h (37 °C in 5% CO2), kidney rudiments were fixed in ice-cold methanol at 4 °C while still attached to their filters, washed in PBS and blocked for 1 h in 2% BSA/PBS at RT. Staining was performed using CALBINDIN antibody (PC253C, Calbiochem; 1:200 diluted in PBS, 0.1% BSA, 0.1% Triton) followed by detection with a Cy3-conjugated anti-rabbit antibody (1:150, Jackson Laboratories) and kidneys were examined using a fluorescence microscope.
To induce YAP overexpression in kidney explants, doxycycline (R&D Systems, AF2028) was added to the culture medium at different concentrations (1,500, 150, 30 and 15 ng ml−1) from day 1 in culture, unless stated otherwise.
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10

Immunohistochemical Analysis of Synovial Tissues

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Synovial tissues were fixed in 10% formalin for about 2 weeks, and embedded in paraffin. Staining methods were previously described in detail30 (link). Briefly, tissue slides (5 μm thick) were deparaffinized, dehydrated, incubated with proteinase K (Abcam, ab64220), permeablized with TBS-T (0.3% Triton X-100), and eliminated endogenous peroxidase with BLOXALL (Vector Lab, SP-6000). They were then incubated for overnight at 4 °C with the appropriate primary antibodies in antibody diluent (DAKO, S3022). For immunofluorescence, the incubated slide was visualized using secondary antibodies: alexa 488-conjugated anti-mouse antibody (Invitrogen, A11001) and Cy3-conjugated anti-rabbit antibody (Jackson Immunoresearch, 111-165-144). Nuclei were counterstained with DAPI (Thermo Scientific, p36935). To visualize stained cells, confocal microscope (Leica Microsystems, Wetzlar, Germany) was used. For immunohistochemistry, the incubated slide was followed by ABC kit components (Vector Lab, PK-6102), DAB substrate kit (Vector Lab, sk4100), counterstaining with hematoxylin (Merck, 1.05174.0500), and mounting with Permanent mounting medium (Vector Lab, H-5000). To visualize stained cells, images were collected with a Nikon eclipse Ti-U microscope.
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