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8 protocols using anti mfn2

1

Organelle Fractionation and Western Blotting

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Mitochondria-enriched and cytosolic fractions were isolated from cortex, hippocampus, cerebellum and olfactory bulb of WT and Wdfy3+/lacZ mice as described before68 (link). Thirty-five µg of proteins were solubilized in SDS sample buffer (Life Technologies, Grand Island, NY) and loaded onto a 4–12% bis-tris gel (Life Technologies) as previously described68 (link). After transferring proteins with an iBlot apparatus (Life Technologies), membranes were blocked with LI-COR blocking buffer (LI-COR Biosciences, Lincoln, NE) for 1 h at 20 °C and subsequently probed overnight at 4 °C with the following antibodies: anti-Lamp2 (Abcam, Cambridge, MA; 1:1,000 dilution), anti-LC3 (Novus Biologicals, Littleton, CO; 1:1,000 dilution), anti-Mfn2 (Proteintech, Rosemont, IL; 1:500 dilution), anti-MnSOD (Millipore, Billerica, MA; 1:1,000 dilution), anti Sqstm1 (Cell Signaling Technology, Danvers, MA; 1:500 dilution), anti-Park2 (Abcam; 1:500 dilution), and anti-Pink1 (Novus Biologicals; 1:1,000 dilution). As a loading control, we used anti-β-actin antibody (Sigma, St. Louis, MO; 1:20,000 dilution, 1 h at 20 °C). Secondary antibodies were from LI-COR (Lincoln, NE; 1:10,000 dilution). Membranes were visualized with the use of the Odyssey Infrared Imaging System (LI-COR) and densitometry analysis carried out with ether the Carestream or ImageJ softwares.
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2

Western Blot Analysis of Apoptosis and Mitochondrial Dynamics

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The cells were lysed with lysis buffer (Beyotime, Shanghai China) supplemented with a protease inhibitor solution (Beyotime) and centrifuged at 12 000 g for 10 min at 4 °C. Extracted proteins were separated on 10–15% sodium dodecyl sulfate polyacrylamide gels and transferred to nitrocellulose membranes. After blocking with 5% skim milk in Tris-buffered saline containing 0.1% Tween 20 (TBST) for 1 h at 37 °C, the membranes were incubated overnight with primary antibodies at 4 °C, washed with TBST, and then incubated with secondary antibodies. The western blot results were quantified by densitometric analysis using the Quantity One 4.6.9 software (Bio-Rad).
The following antibodies were used: anti-cleaved caspase-9 (9509T, CST), anti-cleaved caspase-3 (9664T, CST), anti-Bax (#2772, CST), anti-Bcl2 (#3498, CST), anti-cytochrome c (10093, Proteintech), VDAC rabbit mAb (4661, CST), anti-MFN1 (NBP1-71775, Novus Biologicals), DRP1 rabbit mAb (8570, CST), OPA1 rabbit mAb (80471, CST), anti-FIS1 (D122377-0025, BBI life sciences), anti-MFN2 (12186, Proteintech), anti-beta tubulin (10094, Proteintech), anti-PSD95 (20665, Proteintech), spinophilin rabbit mAb (14136, CST, Boston), HP-goat anti-mouse (ZB-2305, Zsbio, Beijing, China), HP-goat anti-rabbit (ZB-2301, Zsbio, Beijing, China), and Alexa Fluor 594 AffiniPure Goat Anti-Rabbit IgG (H+L) (33112ES60, Yeasen).
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3

Mitochondrial Dysfunction and Cell Death

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TMZ, Compound C, AICAR, Mdivi1, MG132 and WY14643, were purchased from MedChemExpress company. MTT and N‐Acetyl‐L‐cysteine (NAC) were purchased from Sigma‐Aldrich. MitoTracker™ Red FM (M22425), Hoechst 33342 (H1399) and anti‐Ubiquitin WB Antibody (13–1600) were purchased from Invitrogen (Thermo Fisher Scientific, Inc.) (1:1,000). Anti‐phospho‐Ubiquitin (Ser65) (ABS1513‐I) was purchased from Merck KGaA company (1:1000). Anti‐P53 (21891–1‐AP), anti‐PINK1 (23274–1‐AP), anti‐Parkin (14060–1‐AP), anti‐Drp1 (12957–1‐AP), anti‐Opa1 (27733–1‐AP), anti‐Mfn1 (13798–1‐AP), anti‐Mfn2 (12186–1‐AP), anti‐Caspase‐9 (10380–1‐AP), anti‐BAX (50599–2‐Ig), anti‐Caspase‐3 (19677–1‐AP), anti‐VDAC1 (10866–1‐AP), anti‐Lamin B (12987–1‐AP), anti‐Cytochrome c (10993–1‐AP), and anti‐β‐actin (60008–1‐Ig) were purchased from ProteinTech Group, Inc., (Chicago, IL, USA) (1:1,000). Anti‐γ‐H2A.X (ab81299) was purchased from Abcam (1:1000). Anti‐AMPKα (2532) and p‐AMPKα (50081) were purchased from Cell Signaling Technology, Inc. (Massachusetts, USA) (1:1000). Anti‐phospho‐DRP1(Ser616) (DF2972) was purchased from Affinity Biosciences (1:1000). Anti‐phospho‐DRP1(Ser637) (6319S) was purchased from Cell Signaling Technology, Inc. (1:1,000).
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4

Mitochondrial Protein Analysis by Western Blot

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Total intracellular protein was extracted using precooled RIPA lysis buffer. Protein concentrations were detected using a BCA protein assay kit (Beyotime). Samples with equal protein concentrations were separated by 10% SDS‐PAGE. The proteins were transferred to PVDF membranes (Roche). The membranes were blocked with skim milk for 1 h at room temperature and incubated with primary antibody overnight at 4 °C. Membranes were incubated with appropriate HRP‐conjugated secondary antibody (ABclonal; 1:10 000) for 1 h at room temperature. Signals were detected using enhanced chemiluminescence reagent (ECL, Advansta). The following primary antibodies were used for Western blot analysis at the indicated dilutions: anti‐Mfn2 (Proteintech, 1:1000), anti‐Vdac (ABclonal, 1:1000), anti‐COXIV (ABclonal, 1:1000), anti‐Tom20 (ABclonal, 1:1000), anti‐Hif‐1α (ABclonal, 1:1000), and anti‐β‐actin (ABclonal, 1:1000).
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5

Rat Insulinoma Cell Line Study

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Rat insulinoma cell line (INS-1) was from the American Type Culture Collection (Manassas, VA, USA). Rabbit anti-Bmal1 antibody was purchased from Abcam (Cambridge, MA, USA). Rabbit anti-Mfn1, anti-Mfn2, anti-Fis1, and anti-GAPDH antibodies were from Proteintech (Chicago, IL, USA). RPMI-1640 medium and cell culture reagents were from Gibco (Grand Island, NY, USA).
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6

Mitochondrial Regulation and Apoptosis Assay

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Western blotting was performed as described previously. The primary antibodies included anti-USP8 (Proteintech, USA), anti-PINK1 (Proteintech, USA), anti-Parkin(CST, USA), anti-Ubiquitin (Proteintech, USA), anti-GAPDH (Proteintech, USA), anti-VDAC1 (Proteintech, USA), anti-Fis1 (Proteintech, USA), anti-Drp1 (CST, USA), anti-phospho-Drp1 (Ser616, CST, USA), anti-Bax, anti-Bcl2, anti-Mfn2, anti-SOD, anti-Mn-SOD, anti-ATG7, anti-Beclin1 (all were from Proteintech, USA), anti-P62 (CST, USA), anti-LC3II/I (Proteintech, USA), anti-LC3B (Proteintech, USA), anti-CAT (Proteintech, USA), anti- cytochrome C (Proteintech, USA), anti-Cleaved-caspase9 (Proteintech, USA). Densitometry was conducted with the image processing and analysis program AlphaView.SA, and the data were expressed as relative units.
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7

Generation and Validation of Trak1 Antibody

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Rabbit polyclonal anti-Trak1 antibody was generated against the synthetic peptide corresponding to residues 935–953 of human Trak1 and was affinity-purified as previously described (Webber et al., 2008 (link)). Other primary antibodies used in this study include: anti-TOM20 (Santa Cruz); anti-Mfn1 (Abcam); anti-Mfn2 (ProteinTech Group, Inc.); anti-Miro1 (clone 4H4, Abnova); anti-Miro2 (ProteinTech Group, Inc); anti-Drp1 (Abcam); anti-GFP (B2, Santa Cruz); anti-Myc (9E10); anti-HSP60 (Stressgen); anti-GAPDH (Cell Signaling); and anti-β-actin (clone C4, Millipore). Horseradish-peroxidase-conjugated and FITC- or TRITC-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories.
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8

Western Blot Analysis of Mitochondrial Dynamics

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Protein extracts were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes as previously described [23 (link)]. The membranes were incubated with the following antibodies: anti-VEGFA (Proteintech, 66828-1-1g); anti-pERK1/2 (Cell Signaling, 4370), anti-ERK1/2 (Cell Signaling, 4695), anti-MFN1 (Proteintech, 13798-1-AP), anti-MFN2 (Proteintech, 12186-1-AP), anti-pDRP1 ser616 (Cell Signaling, 3455), anti-DRP1 (Proteintech, 12957-1-AP), and anti--actin (Cell Signaling, 3700), at 4C overnight. After washing, the membrane was incubated with the horseradish peroxidase-conjugated secondary antibodies at 37C for 1h. The immunoreactive bands were visualized with enhanced chemiluminescence reagent (Thermo Fisher, 32109) and imaged with the ChemiDoc XRS Plus luminescent image analyzer (Bio-Rad). Densitometric quantification of band intensity from 4 independent experiments was conducted with Image-Pro Plus 6.0 software.
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