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Z1 inverted microscope

Manufactured by Zeiss
Sourced in United States, Germany

The Z1 inverted microscope is a versatile laboratory instrument designed for a variety of imaging applications. It features a stable inverted frame and accommodates a range of objectives to enable high-resolution imaging. The Z1 provides a reliable and consistent platform for users to conduct their research and analysis tasks.

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28 protocols using z1 inverted microscope

1

Detailed Research Equipment Specifications

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The Spectrophotometer Zenyth 200 (ELISA reader) was from Anthos (Eugendorf, Austria).

The Kinematica Polytron was from Brinkmann Instruments (Westbury, NY, USA).

The flow cytometer used was the FACSCalibur, including its software, from Becton Dickinson (Mountain View, CA, USA).

The Elisa reader Ceres UV 900 was from Bio-Tek (Burlington, VT, USA).

The β-counter, a 1600 CA Tri-Carb liquid scintillation analyzer, was from Packard (Meriden, CT, USA).

Surgery equipment was from Bar Naor (Ramat-Gan, Israel).

The densitometric apparatus was ImageQuant LAS 4010 (GE Health Care Life Sciences, Rehovot, Israel).

Thermal cycler (MJ Mini, Bio-Rad Laboratories, Rishon Le Zion, Israel).

E-Gel PowerBase apparatus (Invitrogen, Life Technologies, RHENIUM, Modi'in, Israel)

LAS-3000 luminescent image analyzer (Fujifilm, Tokyo, Japan).

Hamilton–Kinder sensor in a soundproof ventilated apparatus (Kinder Scientific, Poway, CA, USA).

Z1 inverted microscope (Zeiss, Oberkochen, Germany).

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2

Immunofluorescent Imaging of FFPE Brain Tissue

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Formalin-fixed paraffin-embedded (FFPE) tissue sections of different brain regions of saline, SIV+ macaques, and control and HIV+ brain sections were deparaffinized and rehydrated using decreasing percentage of ethanol followed by antigen retrieval, blocking, and incubation with respective antibodies, as described previously [62 (link)]. Fluorescent images were acquired using Z1 inverted microscope (Carl Zeiss, Thornwood, NY) and analyzed using the AxioVs 40 Version 4.8.0.0 software (Carl Zeiss MicroImaging GmbH).
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3

Quantification of GFP-LC3 Puncta

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Fluorescence images were taken with a Zeiss Observer using a Z1 inverted microscope (Carl Zeiss, Thornwood, NY, USA) and the acquired images were analyzed using Image J software. Firstly, the region of interest or the cells to be analyzed were selected using the polygon selection tool. The green channel was extracted to grayscale followed by photographic inversion (GFP fluorescence converted to black pixels over a white background). The regions of interest to be measured were then analyzed by the measure particles algorithm to record the GFP-LC3 puncta number, area, and size. Results were displayed in the results window and were transferred to an excel spreadsheet using the functions of ImageJ.
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4

Fluorescence Microscopy for Cell GSH

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The effect of chemicals on cell GSH content was determined by fluorescence microscopy. Briefly, 0.5 × 106 cells/mL were plated in a 12-well plate, exposed to chemicals during indicated times, washed with PBS and then loaded with 30 μM dibromobimane for 30 min at 37 °C in the dark. Cells were then washed with PBS and transferred to µ-slides 8-well ibidiTreat (ibidi GmbH, München, Germany) for observation. Images were obtained using an Axio Observer. Z1 inverted microscope (Zeiss) and analyzed with Fiji software from ImageJ (http://fiji.sc/Fiji).
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5

Visualizing Autophagy in Astrocytes

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Human A172 astrocytoma cell line and human primary astrocytes were seeded in a 24-well plate containing sterile glass coverslips (11 mm) at a density of 5×104 cells per well at 37°C in a humidified, 5% CO2 incubator for 24 h. The cells were transfected with the RFP-GFP-LC3 plasmid (ptfLC3; Addgene plasmid # 21074) [54 (link)], using Lipofectamine® 2000 Reagent, according to the manufacturer’s protocol, for 10 h following which the culture medium was replaced with the respective 10% heat-inactivated FBS-DMEM and the astrocytes were then treated with different agents. Thereafter, the astrocytes were rinsed 2 times with phosphate-buffered saline (PBS; Hyclone Laboratories, SH3025801) and fixed with 4% paraformaldehyde in PBS for 15 min at room temperature, followed by 3 times rinse with PBS. Subsequently, the coverslips were mounted on glass slides with ProLong Gold Antifade Reagent with DAPI (Molecular Probes, P36935). Fluorescent images were taken on a Zeiss Observer using a Z1 inverted microscope (Carl Zeiss, Thornwood, NY, USA) and the acquired images were analyzed using the AxioVs 40 Version 4.8.0.0 software (Carl Zeiss MicroImaging GmbH).
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6

Immunofluorescence Imaging of Astrocytes

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Cells were seeded on the cover-slips (11 mm) in a 24-well plate at a density of 5×104 cells per well at 37°C in a humidified, 5% CO2 incubator for 24h. Serum-starved astrocytes were exposed with morphine (500 nM) for 24 h. The astrocytes were next rinsed with 1× PBS and fixed with 4% paraformaldehyde in PBS for 20 min at room temperature, followed by permeabilization with 0.3% Triton X-100 (Fisher Scientific, BP151–500) in PBS and blocking in bovine serum albumin for 1 h at room temperature. Next, the cells were incubated overnight with appropriate primary antibody (1:200) at 4°C followed by incubation with secondary antibody Alexa Fluor 594 conjugated goat anti-rabbit IgG (H+L) for 2 h to detect the expression of the indicated protein. Thereafter, the coverslips were mounted on glass slides with ProLong Gold Antifade Reagent with DAPI (Molecular Probes, P36935). Fluorescence images were captured on a Zeiss Observer using a Z1 inverted microscope (Carl Zeiss, Thornwood, NY, USA) and the acquired images were analyzed using the AxioVs 40 Version 4.8.0.0 software (Carl Zeiss MicroImaging GmbH). Quantification was performed by Image J Launcher software.
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7

Autophagy Imaging in Human Pericytes

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Human pericytes were seeded in a 24-well plate containing sterile glass
coverslips (11 mm) at a density of 5×104 cells per well at
37°C in a humidified, 5% CO2 incubator for 24 h. The cells
were transfected with the RFP-GFP-LC3B plasmid (ptfLC3; Addgene plasmid # 21074)
[41 (link)] using
Lipofectamine® 2000 Reagent, according to the
manufacturer’s protocol, for 10 h following which the culture medium was
replaced with the respective 10% heat-inactivated FBS-DMEM and the astrocytes
were then treated with different agents. Thereafter, the pericytes were rinsed 2
times with phosphate-buffered saline (PBS; Hyclone Laboratories, SH3025801) and
fixed with 4% paraformaldehyde in PBS for 15 min at room temperature, followed
by rinsing thrice with PBS. Subsequently, the coverslips were mounted on glass
slides with ProLong Gold Antifade Reagent with DAPI (Molecular Probes, P36935).
Fluorescent images were taken on a Zeiss Observer using a Z1 inverted microscope
(Carl Zeiss, Thornwood, NY, USA) and the acquired images were analyzed using the
AxioVs 40 Version 4.8.0.0 software (Carl Zeiss MicroImaging GmbH).
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8

Colocalization Analysis of Cellular Markers in HIV-1 Tg Rat Brain Tissue

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Formalin-fixed, paraffin-embedded brain tissue sections of wild-type and HIV-1 Tg rats were baked at 60 °C overnight, followed by deparaffinization, rehydration, and antigen retrieval using the standard protocol. Then the slides were incubated with a blocking buffer containing 10% normal goat serum for 1 h at room temperature followed by the addition of primary antibodies, such as p21 (1:400), p16 (1:100), and GFAP (1:500), and incubated overnight at 4 °C. The next day, the sections were washed, followed by incubation with Alexa Fluor 488 goat anti-rabbit (1:500) and Alexa Fluor 555 goat anti-mouse (1:500), respectively, at room temperature for 2 h. The slides were then mounted, and fluorescent images were obtained using a Z1 inverted microscope (Carl Zeiss Microscopy, LLC, White Plains, NY, USA) for the colocalization analysis.
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9

Wound Healing Assay with HTR-8/SVneo Cells

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HTR-8/SVneo cells were incubated in a 6-well plate at a density of 5 × 105 cells per well. When the cell confluence reached 80 %, the cells were scratched with a 200 μl pipette tip, washed three times with PBS, and then RPMI 1640 medium containing 2 % FBS was added. The scratch sizes of cells at 0 h, 12 h, and 24 h were recorded with a Z1 inverted microscope (Carl Zeiss, USA). The percentage of wound healing was analyzed using ImageJ software (version 1.53; National Institutes of Health, USA). All experiments were repeated independently three times.
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10

Mitochondrial Superoxide Quantification in HIV TAT-Treated mPMs

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The level of mitochondrial-derived superoxide radicals in the mPMs exposed to HIV TAT was monitored using the MitoSOX™ Red dye (Invitrogen; M36008) according to the manufacturer's instructions. Briefly, MitoSOX™ Red reagent permeates live cells where it selectively targets mitochondria and is rapidly oxidized by superoxide, but not by other ROS or reactive nitrogen species. Oxidation of MitoSOX™ Red reagent by superoxide produces red fluorescence that is visualized by microscopy. Herein, mPMs seeded on sterile glass coverslips (11 mm) placed in a 24-well plate at a density of 5 × 104 cells per well and exposed to HIV TAT (7 nM) for 48 h. Followed by the cells were washed with 1x PBS and incubated with MitoSOX™ Red dye (5 μM) for 15 min at 37 °C. After staining, the cells were washed and fluorescent images were acquired on a Zeiss Observer using a Z1 inverted microscope (Carl Zeiss, Thornwood, NY, USA). As a precaution, images were acquired within 10–20 min, since MitoSOX tends to accumulate in the nucleus after approximately 40 min [57 (link)]. All the experiments were repeated six times.
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