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Hydroxyethyl piperazine ethane sulfonic acid hepes

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Hydroxyethyl piperazine ethane sulfonic acid (HEPES) is a commonly used buffer solution in various laboratory applications. Its primary function is to maintain a consistent pH level in biological and chemical experiments.

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7 protocols using hydroxyethyl piperazine ethane sulfonic acid hepes

1

Evaluating NAD+ Modulation in Cell Cultures

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β-Nicotinamide adenine dinucleotide (NAD+), ADH, ALDH, Minimum Essential Medium Eagle (MEM), fetal bovine serum (FBS), penicillin, streptomycin, dimethyl sulfoxide (DMSO), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), 2,7-dichlorofluoroscin diacetate (DCF-DA), 2-thiobarbituric acid (TBA), trichloroacetic acid (TCA), phenylmethanesulfonyl fluoride (PMSF), pyruvic acid, malic acid, mannitol, egtazic acid (EGTA), hydroxyethyl piperazine ethane sulfonic acid (HEPES), and 5,5',6,6'-tetrachloro-1,1',3,3'-tetraethylbenzimidazolocarbocyanine iodide (JC-1) were purchased from Sigma-Aldrich Chemical Co. (USA). Ethanol was purchased from Ethanol Supplies World Co., Ltd. (Republic of Korea). Ethanol and acetaldehyde assay kits were purchased from Megazyme (Ireland).
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2

Evaluating Cellular Responses using MTS Assay

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CRA-1 was purchased from Kyokuto (Tokyo, Japan). Mouse IgG and anti-human IgE fluorescein isothiocyanate (FITC) antibodies were purchased from Biosources (Burlingame, CA, USA). Anti-mouse IgG FITC antibody was purchased from Jackson ImmunoResearch Laboratories, Inc. (Baltimore, PO, USA). The RPMI-1640 medium, antibiotics, antimycotics, and fetal bovine serum (FBS) were obtained from GIBCO BRL (Gaithersburg, MD, USA). The 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)- 2-(4-sulfophenyl)-2H-tetrazolium, inner salt (MTS) was purchased from Promega (Madison, WI, USA). The TRIzol reagent, Superscript II reverse transcriptase, and oligo(dT)12–18 primer were purchased from Invitrogen (Carlsbad, CA, USA). The Taq DNA polymerase was purchased from Roche (Mannheim, Germany). The dNTP set was purchased from Amersham Pharmacia Biotech Inc. (Piscataway, NJ, USA). All other reagents, including hydroxyethyl piperazineethanesulfonic acid (HEPES), Fura 2-acetoxymethyl ester (AM), dimethylsulfoxide, histamine, and o-phthalaldehyde (OPA) were purchased from Sigma Chemicals (St. Louis, MO, USA).
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3

Antibiotic Resistance Mechanisms Evaluation

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The antibiotic florfenicol was supplied by the pharmaceutical company Virbac (Carros, France). The antibiotic imipenem was purchased from Sequoia Research Products (Pangbourne, United Kingdom). All the chemicals polymyxin B, polymyxin B nonapeptide (PMBN), phenylalanine-arginine beta- naphthylamide (PAβN), carbonylcyanide m-chlorophenylhy- drazone (CCCP), cetyl trimethylammonium bromide (CTAB), dimethyl sulfoxide (DMSO), 3,3′-dipropylthiacarbocyanine iodide [DiSC3(3)], hydroxyethyl piperazineethanesulfonic acid (HEPES), ethylene diamine tetraacetic acid (EDTA), and benzalkonium chloride were purchased from Sigma-Aldrich (St Quentin Fallavier, France). The polyamino-isoprenyl derivatives chemolibrary was described previously (Bolla et al., 2012 ).
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4

Derivation and Culture of H1299-E3 and Vero E6 Cells

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The H1299-E3 (H1299-ACE2, clone E3, H1299 originally from ATCC as CRL-5803) cell line was derived from H1299 as described in our previous work58 (link),69 (link). The H1299-E3 cells were propagated in growth medium consisting of complete Roswell Park Memorial Institute (RPMI) 1640 medium with 10% fetal bovine serum (Hyclone) containing 10mM of hydroxyethylpiperazine ethanesulfonic acid (HEPES), 1mM sodium pyruvate, 2mM L-glutamine and 0.1mM nonessential amino acids (all Sigma-Aldrich). Cells were passaged every second day. For virus isolation, Vero E6 cells (originally ATCC CRL-1586, obtained from Cellonex in South Africa) were propagated in complete growth medium consisting of Dulbecco’s Modified Eagle Medium (DMEM) with 10% fetal bovine serum (Hyclone) containing 10mM of HEPES, 1mM sodium pyruvate, 2mM L-glutamine and 0.1mM nonessential amino acids (all Sigma-Aldrich). Vero E6 cells were passaged every 3–4 days.
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5

Biochemical and Immunological Assays for Neurodegeneration

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Dulbecco’s Modified Eagle’s Medium (DMEM), calf serum (CS), penicillin, streptomycin, Dimethyl sulfoxide (DMSO), MTT, and DCF-DA were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). A SOD kit was obtained from Dojindo Molecular Technologies (Rockville, MD, USA). Ethanol was purchased from Ethanol Supplies World Co., Ltd. (Jeonju, Republic of Korea). Dimethyl sulfoxide (DMSO), 2-thiobarbituric acid (TBA), trichloroacetic acid (TCA), o-phthaldialdehyde (OPT), acetylthiocholine, AChE, pyruvic acid, malic acid, mannitol, egtazic acid (EGTA), hydroxyethyl piperazine ethane sulfonic acid (HEPES), 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolocarbocyanine iodide (JC-1), N,O-bis(trimethylsilyl)trifluoroacetamide(BSTFA), and all other reagents used were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA).
The primary and secondary antibodies are listed below: ACh, AChE, SYP, PSD-95, GAP-43, TLR-4, NF-κB, IκB-α, IL-1β, TNF-α, BCL-2, BAX, caspase-3, ZO-1, occludin, claudin-1, and β-actin were purchased from Santa Cruz Biotech (Dallas, TX, USA). ChAT and Horseradish peroxidase (HRP)-conjugated anti-rabbit IgG secondary antibody were purchased from Cell Signaling Tech (Danvers, MA, USA). HRP-conjugated anti-mouse IgG secondary antibody purchased from Bio-Rad (Hercules, CA, USA).
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6

Fluorescent Probes for Cellular Imaging

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Hydroxyethyl piperazineethanesulfonic acid (HEPES) and all other chemicals were obtained from Sigma-Aldrich (St Louis, MO, USA) or VWR BDH chemicals (Radnor, PA, USA). Fura-2/AM, fluo-4/AM, calcein/AM, pluronic acid F-127, and fluorescein conjugated-BSA were obtained from Thermo Fisher Scientific (Waltham, MA, USA), bromosulfophthalein (BSP) was from Fluka (Fluka, Buchs, Switzerland), and 190 proof ethyl alcohol from Decon, Labs Inc. Heat shock, fraction V BSA was from Roche (Basel, Switzerland). BSA was extensively dialyzed against normal saline plus 10 mM HEPES using Spectra/Por 12–14 kDa cut-off dialysis tubing (Thermo Fisher Scientific).
Dr. K. Mikoshiba (RIKEN) generously provided the plasmid pIRIS-1 and pRatiometric-pericam-nu was a gift from A. Miyawaki (RIKEN). pGP-CMV-GCaMP6f was a gift from Douglas Kim & GENIE Project (Addgene plasmid # 40755; http://n2t.net/addgene:40755; RRID:Addgene_40755). Adenovirus particles expressing PKCβII-enhanced green fluorescent protein (Ad-PKCβII-EGFP) were a gift from Dr. R. Rizzuto (University of Padua).
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7

Bovine Knee Cartilage Explant Culture

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Fresh adult bovine knee joints (n = 3) were procured from the butcher for bovine explant research on the day of slaughter, as described previously 8 . Full-thickness articular cartilage explants without the subchondral bone were extracted from the knee joints. Discs of cartilage were then dissected aseptically using a 4 mm dermal punch (Kai Medical, Gifu, Japan). The explants were grown in chondrogenic Eagle's minimal essential medium (DMEM), high (4.5 g/L) glucose (DMEM-HG, Invitrogen, Waltham, USA) supplemented with 1% inulin-transferrin-selenium (Sigma-Aldrich, MA, USA), 1.25 mg/mL bovine serum albumin (Sigma-Aldrich, St. Louis, USA), 0.1 μM dexamethasone (Sigma-Aldrich, St. Louis, USA), 0.1 mM ascorbic acid (Sigma-Aldrich, MA, USA), 1% penicillin-streptomycin, 10 mM hydroxyethyl piperazineethanesulfonic acid (HEPES) (Sigma-Aldrich, St. Louis, USA), 0.1 mM L-proline (Sigma-Aldrich, St. Louis, USA), 0.1 mM MEM nonessential amino acids (Thermo Fisher Scientific, Waltham, USA) and 10 ng/mL transforming growth factor-β1 (TGF-β1, Gibco, CA, USA)) supplemented with 10% fetal bovine serum (FBS) for 48 h at 37 ℃ and 5% carbon dioxide 22 . The bovine cartilage explants were treated with or without Interleukin-1β (IL-1β) (10 ng/mL) for 7 days to mimic the OA phenotype 23 (link).
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