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8 protocols using ix83 dsu

1

Real-Time Caspase-3 Monitoring in Live Neurons

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NucView 488 Caspase-3 substrate, a cell membrane-permeable fluorogenic caspase substrate designed for detecting caspase-3 activity within live cells in real time, was used in accordance with the manufacturer’s recommendations (Biotium Inc). Briefly, neuronal primary cultures were incubated in medium containing NucView 488 Caspase-3 substrate (final concentration 5μM) in a stage top chamber with 5% CO2 at 37°C, which was placed on the stage of a spinning disc confocal inverted microscope (Olympus, IX83-DSU). Fluorescent field images were obtained with a specific GFP filter at 6min intervals for a total of 24h. MetaMorph software (Molecular Devices) was used to assess apoptotic cell death by calculating the percentage of Caspase-3 positive cells in a total of 5 experiments on 10 random fields.
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2

Astrocyte Migration and Wound Healing

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Astrocytes were plated on 24-well glass bottom plates. When confluent, the cells were mechanically scratched with a pipette tip (20μl) similar to previous descriptions (MacFarlane and Sontheimer, 1997 (link); Yu et al., 1993 (link)), yielding a linear cell-free area of approximately 300–400μm. Cells were washed twice with sterile PBS, and medium was replaced. After 24 and 48h of incubation, during which time the medium was not exchanged, cells were fixed with 4% paraformaldehyde prior to immunocytochemistry. For measurements of the area covered by cells expressing GFAP, vimentin and nestin, stained scratch wounds were analyzed using MetaMorph software (Molecular Devices). A threshold above background was set for each individual image and the pixel area above threshold was measured. For time lapse experiments, cultures were incubated in a stage top chamber with 5% CO2 at 37°C (Live-Cell Control Unit), which was placed on the stage of a spinning disc confocal microscope (Olympus, IX83-DSU) equipped with a motorized z-stage. A 10X objective was used for acquiring images. Bright-field and fluorescent images were taken every 6min over a period of 48h using a CCD camera (Hamamatsu ORCA-ER). For all the scratch wound experiments, data represent pooled results from at least 6 independent cultures.
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3

Fluorescent Labeling of Sperm Actin

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After incubation in the appropriate medium, cells were fixed in 0.1% glutaraldehyde and 1.5% formaldehyde in PBS for 1 h and collected by centrifugation at 1300g for 5 min. The sperm pellet was immediately resuspended and incubated with 50 mM NH4Cl in PBS during 15 min and washed twice by resuspension/centrifugation in PBS and once in distilled water. Water-resuspended cells were used to prepare smears on glass slides, which were air-dried at room temperature. Sperm were rinsed with PBS for 7 min and then permeabilized using acetone at −20 °C for 7 min and washed three times in PBS. Slides were then incubated with TRITC-phalloidin (1:30) in PBS for 1 h at room temperature in humid conditions, in the dark. Sperm were washed three times with PBS, once in distilled water and air-dried at room temperature. Finally, they were mounted under coverglass slides using Vectashield mounting media. Nonspecific staining was determined by incubating the sperm in the absence of TRITC-phalloidin. Slides were examined using a fluorescence confocal microscope (Olympus IX83-DSU), and images were captured at 60x magnification (Plan Apo, NA = 1.42 [oil]), with a sCMOS camera (Andor, Zyla). The fluorescence intensity was quantified using ImageJ software1.47 V (National Institute of Health) and was calculated in regions of interest localized in the sperm head. The background intensity was subtracted.
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4

Microfluidic Flow Characterization of Particle Suspensions

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Figure 2 shows a schematic of the experimental apparatus. A suspension was injected into the microchannel by a syringe pump (KDS210, KD Scientific, Holliston, MA, USA) in a steady state. Fluorescent images of the flow field and phase contrast images were obtained for calibration. The Reynolds number was altered by presetting the flow rate to approximately 5–20 µL/min, which corresponds to the Re range from 0.125 to 0.5. In this study, confinement C [11 (link)] is defined as C = dp/D = 0.05, which is the ratio of the particle size to tube size. The particle Reynolds number (Rep) [34 (link)] is defined as Rep = Re × C2 and it corresponds to Rep in the range of 2.9 × 10−4–1.2 × 10−3.
The measurement area was set parallel to the flow direction passing through the tube axis. The particle distribution in the radial direction and flow velocity were measured. To eliminate the influence of the attachment of the connector on the tube, the flow field was measured at a location 20D away from the inlet. Measurement conditions were fixed as recorded in Table 1. Different frame rates were set for each condition so that the particles travel similar distances (about 0.3D on the centerline) at each shutter interval. Furthermore, the flow fields were measured three times for each condition using a disk scanning microscope system (IX83-DSU, Olympus, Tokyo, Japan) at 10× magnification.
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5

Time-lapse Imaging of Oligodendrocyte Precursor Cell Migration

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Brain acute slice cultures were performed according to De Simoni and Yu.48 (link) Briefly, 150-μm coronal brain sections were sliced from P3 triple transgenic p38γf/f (or p38γf/+)/tdTomato+/NG2 Cre+ mice with a Leica VT1000S vibratome. The sections were plated on Corning Transwell culture plate inserts (Sigma-Aldrich; CLS3492) and cultured in minimal essential medium with 1× GlutaMAX, Earle’s balanced salt solution and 25% horse serum at 37°C with 5% CO2. After 24 h, 1 μM of 4 hydroxy-Tx (4-OH-Tx) was added and slices were cultured for another 48 h. Culture medium was replaced and PDGF-AA (20 ng/ml) and basic fibroblast growth factor (bFGF) (10 ng/ml) were added 24 h before running the time-lapse experiments according to the procedure described by Cheli et al.49 (link) The sections were placed on a spinning disc confocal inverted microscope (Olympus; IX83-DSU) equipped with an incubating chamber and a motorized stage. Images of red tdTomato+ cells were collected every 6 min for 24 h. Cell migration speed and distances were analysed by tracing at least six cells per slice using the motion tracking function in MetaMorph software (Molecular Devices).
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6

Oligodendrocyte Process Dynamics Analysis

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Two days after transfection with wild-type- and TS2-Cav1.2 plasmids, OPCs were cultured in DMEM/F12 supplemented with insulin (5μg/ml), apo-transferrin (50μg/ml), sodium selenite (30nM), 0.1% BSA, progesterone (0.06ng/ml), putrescine (16μg/ml), T3 (15nM) and 1% FBS. Cultures were placed in a stage top chamber with 5% CO2 at 37°C (Live-Cell Control Unit), which was located on the stage of a spinning disc confocal microscope (Olympus, IX83-DSU) equipped with a motorized z-stage. Time-lapse images of cells were taken every 6min over a period of 6h at 20x magnification using a CCD camera (Hamamatsu ORCA-ER). Imaging was performed on four wells, with at least 6 images taken per well. Individual YFP-positive oligodendrocytes were chosen in a blinded fashion such that the researcher was unaware of the treatment condition. The change in the number and length of primary processes and branch processes for each cell was measured and calculated every half an hour using MetaMorph software (Molecular Devices).
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7

Real-Time Caspase-3 Activity Assay

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NucView 488 Caspase-3 substrate, a cell membrane-permeable fluorogenic caspase substrate designed for detecting caspase-3 activity within live cells in real time, was used in accordance with the manufacturer’s recommendations (Biotium Inc). Briefly, OPC primary cultures were incubated in medium containing NucView 488 Caspase-3 substrate (final concentration 5µM) in a stage top chamber with 5% CO2 at 37°C, which was placed on the stage of a spinning disc confocal inverted microscope (Olympus, IX83-DSU). Fluorescent field images were obtained with a specific GFP filter at 6min intervals for a total of 24 hours. MetaMorph software was used to assess apoptotic cell death by calculating the percentage of Caspase-3 positive cells in a total of five experiments on four random fields.
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8

Visualizing SARS-CoV-2 Infection in IEC Monolayers

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IEC monolayers were fixed and blocked with a Fixation/Permeabilization Solution Kit (BD Biosciences, NJ, USA) and stained with goat anti-ACE2 (Bio-Techne, MN, USA: AF933, 0.2 mg/mL, 150-fold diluted), rabbit anti-TMPRSS2 (Merck, Darmstadt, Germany: HPA-035787, 40-fold diluted), and mouse anti-ZO-1 (Thermo Fisher Scientific: ZO1-1A12, 1000-fold diluted) antibody. To visualize virus NP and SP, IEC#17 monolayers were infected with SARS-CoV-2 at an MOI of 1.0. After washing the cells at 24 hpi, specimens were fixed and blocked with a Fixation/Permeabilization Solution Kit, and were stained with goat anti-ACE2, mouse anti-TMPRSS2 (Santa Cruz Biotechnology, TX, USA: sc-515727, 0.1 mg/mL, 200-fold diluted), mouse anti-SARS-CoV-2 NP (clone: 3A9, Cell Engineering Corporation), and rabbit anti-SARS-CoV-2 SP (clone: SA39, Cell Engineering Corporation). After washing the primary antibodies, the specimens were stained with appropriate donkey secondary antibodies conjugated with Alexa Fluor 488 or Cy3 or Alexa Fluor 647 (Jackson ImmunoResearch, PA, USA). Samples were fixed with ProLong Diamond Antifade Mountant with DAPI (Thermo Fisher Scientific). Images were captured using a fluorescence microscope (IX83-DSU, OLYMPUS, Tokyo, Japan) and confocal laser microscope (FV3000, OLYMPUS).
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