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2 protocols using benzonase

1

Protein Extraction and Detection Protocol

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Cell lysates were prepared by resuspending cells from a 10 cm2 culture well in lysis buffer (50 mM Tris-HCl/50 mM 3-(N-Morpholino)propanesulfonic acid [MOPS] [pH 7.7], 0.1% SDS, and 1 mM EDTA) supplied with protease inhibitors (Roche) and benzonase (New England Biolabs), followed by 30 min incubation at 4°C and filtration with a 0.22 μm spin filter (Millipore). Conditioned medium was centrifuged for 5 min at 500 × g, and the cell pellet was discarded. The supernatant was filtered using a 0.22 μm syringe filter or centrifuged at 4°C at 18,000 × g for 15 min.
Proteins separated by SDS-PAGE were detected with SimplyBlue SafeStain (Invitrogen/Thermo Fisher Scientific) or transferred to nitrocellulose membranes (GE Healthcare) for immunoblotting with Penta·His mouse monoclonal antibody (1:1,000, QIAGEN) or 9E10 anti-Myc mouse monoclonal antibody (1:2,000, Sigma-Aldrich). Chemiluminescence detection was performed with Western Lightning ECL Plus (PerkinElmer).
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2

Western Blotting of Sertoli Cell Proteins

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For western blotting, total proteins from Sertoli cells were dissolved in SDS-PAGE sample buffer (62.5 mM Tris-HCl pH 6.8, 2% SDS, 10% glycerol, 5% β-mercaptoethanol, and 0.02% bromophenol blue) with Benzonase (NEB), separated by SDS-PAGE, and blotted to an Immobilon-P PVDF Membrane (Millipore) by Trans-Blot® Turbo™ Transfer System (BioRad). The membranes were blocked in StartingBlock™ T20 (TBS) Blocking Buffer (Thermo Fisher Scientific) for 30 min, probed with a primary antibody in 1/20 diluted blocking buffer at 4oC overnight, and then incubated with an HRP-conjugated secondary antibody for 1 h at room temperature. The list of primary antibodies used for western blotting is described in Supplementary File 5. Blots were developed using Immobilon Western Chemiluminescent HRP Substrate (Millipore) and exposed onto Super RX-N X-ray film (Fujifilm). To reprobe blots, membranes were incubated in Restore™ Western Blot Stripping Buffer (Thermo Fisher Scientific).
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