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Structured illumination

Manufactured by Zeiss

Structured illumination is a microscopy technique that uses patterned illumination to enhance image contrast and resolution. It projects a series of high-contrast grids or stripes onto the sample, which interacts with the sample's features to generate moiré fringes. By analyzing these fringes, the system can computationally reconstruct a high-resolution image.

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4 protocols using structured illumination

1

Imaging Lipid Raft Dynamics in Astrocytes

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Astrocytes isolated from C57B6J mice were cultured on glass coverslips and treated with IL-1β (100 ng/ml; Millipore), IL-1β + altenusin (50 µM; Enzo Life Sciences), IL-1β + GW4869 (20 µM; Calbiochem), IL-1β + IL-1 receptor agonist (100 ng/ml), TNFα (100 ng/ml), or IL-10 (100 ng/ml) for 2 to 60 min. Cells were fixed with 4% PFA, and lipid raft membrane microdomains were identified using a cholera toxin subunit B conjugated to Alexa Fluor 555, which binds the ganglioside GM1 (CTB-555, Invitrogen/Molecular Probes) (30 (link), 59 (link)). CTB-555–labeled cells were incubated with primary antibodies to ceramide (1:200; Santa Cruz Biotechnology) or nSMase (1:200; Santa Cruz Biotechnology), and the corresponding secondary antibodies were conjugated to Alexa Fluor 488 or Alexa Fluor 546 (1:1000; Invitrogen/Molecular Probes). Fluorescence was imaged with a 100× objective by optical sectioning using structured illumination (Carl Zeiss Inc.). All images for quantification were taken with identical settings and performed on a single plane of focus through the brightest point. Colocalization was confirmed by three-dimensional reconfiguration of z-stack images using orthogonal views as previously described (31 (link)).
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2

Mitochondrial Morphology and Function Analysis

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For fragmentation analysis, MitoDSRed expressing hNs were imaged using Axio-observer LSM 800 with Airyscan or using LED-based illumination and Optical Sectioning by structured illumination (Zeiss), and volumetric analysis of mitochondrial particles was performed using the measurements tool of Volocity 6.3 (PerkinElmer). Mitochondria were scored as fragmented if >15% of the total mitochondrial volume per cell existed in particles with a volume <5 μm3. Mitochondrial potential was assessed by analyzing TMRE fluorescence levels using the dequench method and based on the manufacturer's protocol on a Beckman-Coulter FC500 flow cytometer. For TEM, neurons were fixed with 4% PFA/2% Gluteraldehyde, counterstained with 1% osmium and 1% uranyl acetate in cacodylate buffer, embedded in LR White, sectioned and imaged on a FEI Tecnai G2 F20 Transmission Electron Microscope.
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3

Visualizing Astrocyte-Derived Extracellular Vesicles

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EVs released from astrocytes of GFAP-EGFP mice were visualized by fluorescence imaging of EGFP+ puncta in liver, spleen, and lung tissue sections. Tissues were postfixed in 4% PFA and cryoprotected in 30% sucrose, and 20-µm sections were cut using a cryostat microtome (Leica). Nonspecific binding was blocked with 5% normal goat serum plus 5% normal horse serum in tris-buffered saline (TBS) containing 0.1% Triton X-100 (Fisher Scientific). EGFP was enhanced by incubating sections with anti-GFP rabbit sera (1:500; Invitrogen) at 4°C overnight, followed by incubation with a secondary antibody conjugated to Alexa Fluor 488 (1:1000; Invitrogen). Cells were visualized with F-actin (1:100; Abcam), and nuclei were stained with DAPI as previously described (60 (link)). Imaging was performed with 40× and 100× objectives using optical sectioning by structured illumination (Carl Zeiss Inc.).
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4

Quantifying Axon Initial Segment Changes in Alzheimer's Cortex

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40x z-stacks were captured in the superficial layer of the cortex (approximately layers 2-4) in three regions of the mouse cortex: M1, S1, or V1. Images were captured using structured illumination (Zeiss). In AD brains, three concentric circles (regions of interest, ROI) of 50, 100, and 150 μm diameter were placed over individual plaques of equivalent dimensions (Figs. 1D and E). AIS number and length, and the number of nuclei or microglia were counted within each annulus and within the inner circle. Similar measurements were made in corresponding regions of cortex from TTA and NTG mice. All measurements were performed using ImageJ (NIH). AIS were defined as βIV spectrin-labeled segments greater than 10 μm in length. For all quantifications we imaged 3 plaques (or equivalent control regions) per mouse, with 3 mice of each genotype at each age; we pooled data from the three regions of the cortex. If an AIS crossed two ROIs it was included in the outermost ROI. Measurements were compared in Prism using two-way ANOVA with the Bonferroni multiple comparisons post test.
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