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N 2 hydroxyethylpiperazine n 2 ethane sulfonic acid hepes

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N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid (HEPES) is a chemical compound commonly used as a buffer in cell culture and biochemical applications. It is a zwitterionic organic compound that maintains a stable pH range, typically between 6.8 and 8.2, making it suitable for maintaining the optimal pH environment for various biological processes.

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32 protocols using n 2 hydroxyethylpiperazine n 2 ethane sulfonic acid hepes

1

Evaluation of Cellular Stress Responses

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Dulbecco’s modified Eagle’s medium (DMEM), Ham F12 culture medium, d(+)-glucose, l-glutamine, N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid (HEPES), fetal bovine serum (FBS), and the antibiotic-antimycotic solution, were obtained from Life Technologies (Grand Island, NY, USA). H89, chelerythrine, fluorescein diacetate-acetoxymethyl (FDA-AM), dimethyl sulfoxide (DMSO), insulin, Triton X-100, and bovine Hb were purchased from Sigma-Aldrich (St. Louis, MO, USA). The lactate dehydrogenase (LDH; EC 1.1.1.27) assay kit was obtained from Bio-Maghreb (Tunis, Tunisia). 5-6-chloromethyl 2′-7′dichlorodihydrofluorescein diacetate (CM-H2DCFDA), JC-10, and 4,5-diamino fluorescein diacetate (DAF-FM) were from Molecular Probes (Eugene, OR, USA). U0126 and Apo-ONE Homogeneous Caspase-3/7 assay kit were supplied by Promega (Charbonnières, France).
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2

Metabolic Profiling of Cell Lines

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Williams' Medium E, perhexiline maleate salt, D-(+)-glucose, D-(+)-galactose, cyclosporine A, bongkrekic acid, and dimethysulfoxide (DMSO) were purchased from Sigma-Aldrich (St. Louis, MO). Fetal bovine serum (FBS) was obtained from Atlanta Biologicals (Lawrenceville, GA). Dulbecco's modified Eagle's medium (DMEM), DMEM deprived of glucose, sodium pyruvate, N-2-hydroxyethylpiperazine-N′-2-ethanesulfonic acid (HEPES), and antibiotic-antimycotic were obtained from Life Technologies (Carlsbad, CA).
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3

Expansion of mouse hematopoietic stem/progenitor cells

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C57BL/6-CD45.1 mouse BM cells, unfractionated or following magnetic c-Kit+ cell enrichment, were cultured using Ham’s F-12 medium (Wako), supplemented with 0.1% PVA (Sigma, Cat# P8136), 1% Insulin-Transferrin-Selenium-Ethanolamine (ITS-X) (100X) (Thermo Fisher Scientific), 1% Penicillin-Streptomycin-L-Glutamine Solution (100X) (Wako), N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid (HEPES) (10 mM; Gibco), mouse TPO (100 ng/ml; PeproTech), and mouse SCF (10 ng/ml; PeproTech) for 28 days, incubated at 37 °C in a humidified 5% CO2 incubator. Medium was changed every other day15 (link),16 (link). Magnetic cell separation was performed using anti-mouse c-Kit MicroBeads (Miltenyi Biotech, Cat# 130-091-224) according to the manufacturer’s instructions. Cell culture using either commercially available pre-packaged HemEx-Type9A (NIPRO) or in-house prepared medium supplemented with 100 ng/mL mouse TPO and 10 ng/mL mouse SCF. Unfractionated whole BM cells were seeded at 2 × 106/mL onto 100 mm dish in 10 mL culture medium (day 0–14) or 60 mm dish in 4 mL culture medium (day 15–28). Magnetic column-enriched c-Kit+ BM cells were seeded at 1 × 106/well onto 48-well plates in 1 mL culture medium. For long-term cultures, complete medium changes were made every 2 days and cell cultures were passaged at a ratio of 1:2-3 when cells exhibited 80–90% confluency.
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4

C2C12 Myoblast Differentiation Protocol

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Mouse skeletal muscle C2C12 myoblasts were cultivated in growth medium consisting of high‐glucose Dulbecco's modified Eagle's medium (DMEM; Gibco, Carlsbad, CA) supplemented with 10% fetal bovine serum (Batch Number 1693362), 1% non‐essential amino acids (Gibco), and 20 mM n‐2‐hydroxyethylpiperazine‐n‐2‐ethane sulfonic acid (HEPES; Gibco). Upon reaching 80–90% confluence, cells were seeded in 12‐well CellBIND plates (Coring Life Science, Lowell, CA) or staining slide flasks (Nunc Lab‐Tek Flask on Slide; Thermo Fisher Scientific, Waltham, MA) at a density of 100,000 cells/well or 240,000 cells/slide flasks, respectively. Following seeding, cells were allowed to grow for 24 hr in growth medium. Then, C2C12 myoblasts were differentiated into myotubes for 5 days in high‐glucose DMEM supplemented with 2% horse serum (Gibco), 1% non‐essential amino acids (Gibco), and 20 mM HEPES (Gibco).
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5

Cultivation and Infection of Bovine Cell Lines

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Madin–Darby bovine kidney (MDBK) cells, embryonic bovine tracheal (EBTr) cells, and fetal bovine testicular (FBT) cells were grown in Eagle’s minimum essential medium (MEM; Sigma-Aldrich Canada Ltd., Oakville, ON, Canada), supplemented with 10 mM N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid (HEPES, Gibco, Life Technologies, Burlington, ON, Canada), 1% nonessential amino acids (Gibco, Life Technologies), 50 µg/mL gentamycin (Gibco, Life Technologies), and 10% fetal bovine serum (FBS; Life Technologies). The cells were grown in a 37 °C incubator supplied with 5% CO2.
Wild-type (WT) BoHV-1, ΔgM-BoHV-1 (BoHV-1 devoid of the UL10 gene), and gM revertant BoHV-1 (ΔgM Rev BoHV-1) were propagated in MDBK cells. The titers were determined in MDBK cells in 24-well plates after overlay with 0.8% UltraPure low-melting agarose (Invitrogen/Thermo Fisher Scientific, Waltham, MA, USA) in MEM, and the virus stocks were stored at −80 °C.
Cell monolayers at 85–90% confluency were infected with WT BoHV-1, ΔgM-BoHV-1, or ΔgM Rev BoHV-1 at different multiplicities of infection (MOIs) in MEM. Virus was removed and replaced with MEM containing 2% FBS after 1.5 h. Cells and culture media were collected at different time points and centrifuged at 3000× g for 30 min at 4 °C.
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6

Calcium Signaling Assay Protocol

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Solutions were prepared immediately before experiments and held at room temperature. GSK1016790A (GSK101; cat. num. G0798; Sigma-Aldrich, St. Louis, MO) and/or GSK205 (cat. num. AOB1612 1263130-79-5; AOBIOUS, Gloucester, MA), in addition to dimethyl sulfoxide (DMSO) for a vehicle control, were added to assay buffer (Hanks’ Balanced Salt Solution [HBSS; cat. num. 14025076; Gibco, Thermo Fisher Scientific, Waltham, MA] with 2% N-2-hydroxyethylpiperazine-N'-2-ethanesulfonic acid (HEPES) [cat. num. 15630130; Gibco, Thermo Fisher Scientific, Waltham, MA]) at 2-folds of the desired concentration (20 nM GSK101, 40 µM GSK205). Solutions were made at 2-folds of the desired concentration because they would be mixed at an equal volume of assay buffer after capturing a baseline fluorescence in Ca2+ signaling experiments.
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7

Lipid and Peptide Reagents for Research

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The zwitterionic lipid 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC) and the cationic lipid 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP) were purchased from Avanti Polar Lipids. (Alabaster, AL, USA). LAH4-L1 peptides (KKALLAHALHLLALLALHLAHALKKA) were purchased from GenScript (Piscataway, NJ, USA). The sterile pyrogen-free bidistilled water OTEC® was purchased from Aguettant (Lyon, France) and the nuclease-free water from Ambion (via Thermo Fisher Scientific, Waltham, MA USA). Absolute ethanol came from Carlo Erba Reagents (Peypin, France). DPBS 1× and 10× (Dulbecco’s phosphate-buffered saline, pH 7.4), RPMI/glutamax and DMEM culture media, fetal bovine serum, β-mercaptoethanol, N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid) (HEPES), glutamine, penicillin/streptomycin and trypsin solution (0.25% Trypsin-EDTA (Ethylenediamine Tetraacetic Acid, Disodium Salt) were all purchased from Gibco (Dublin, Ireland).
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8

Endothelial Cell Culture Protocol

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EC medium consisted of Dulbecco’s Modified Eagle media (DMEM, GIBCO, Cat# 41966-052) supplemented with 2 mM glutamine (GIBCO, Cat# 250-30), 50 IU/mL penicillin (GIBCO, Cat# 15140-122), 50 μg/mL streptomycin (GIBCO, Cat# 15140-122), 50 μM 2-Mercaptoethanol (2-ME) (GIBCO, Cat# 31350-010), 1mM sodium pyruvate (GIBCO, Cat# 11360-039), 20mM N-2-hydroxyethylpiperazine-N’-2-ethane sulfonic acid (HEPES) (GIBCO, Cat# 15630-056), 1% non-essential amino acids (GIBCO, Cat# 11140-050), 20% FCS and 150 μg/ml EC growth supplement (Sigma-Aldrich, Cat# E0760). Medium was replaced every 48 hours. When confluent, cells were detached with trypsin/EDTA (GIBCO, Cat# T4049) and passaged.
For functional assays, ECs were used between passages 2 and 8 and treated with 600 U/mL murine IFN-γ (PeproTech, Cat# 315-05) for 48 to 72 hours prior to use in experiments.
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9

Maintenance and Characterization of DLBCL Cell Lines

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Activated B-cell (ABC) subtypes (HBL1, U2932, SUDHL2, and TMD8) and germinal center B-cell (GCB) subtypes (SUDHL4, HT, LY18, and WSL-DLCL2) were maintained in Roswell Park Memorial Institute (RPMI) 1640 with 2 mM L-glutamine (Gibco), supplemented with 10% Fetal bovine serum (FBS) heat-inactivated (HI) at 56°C for 30 min (Gibco), penicillin (100 µg/mL) and streptomycin (100 µg/mL) (Gibco), and 1 mM N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid (HEPES) (Gibco). Cells were incubated at 37°C with 5% CO2 and maintained in a log growth phase. Cell viability and growth phase were measured using trypan blue exclusion assay, and cells were only used in a log growth phase with viability greater than 90% for all cell lines.
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10

Lipid-based Nanoparticle Synthesis and Characterization

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i-Particles® (PLA nanoparticles) were purchased from Adjuvatis (Lyon, France). Lipids (1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC) and 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP)) were purchased from Avanti Polar (Alabaster, AL, USA). LAH4-L1 peptide (KKALLAHALHLLAL-LALHLAHALKKA) was purchased from GenScript (Piscataway, NJ, USA). Absolute anhydrous ethanol was purchased from Carlo Erba Reagents (Peypin, France), sterile pyrogen-free bidistilled water OTEC® was purchased from Aguettant (Lyon, France), and nuclease-free water was purchased from Ambion (Thermo Fisher Scientific, Waltham, MA USA). Furthermore, 1× and 10× DPBS (Dulbecco’s phosphate-buffered saline, pH 7.4), culture medium (RPMI/glutamax and DMEM), fetal bovine serum (FBS), N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid (HEPES), and β-mercaptoethanol were all purchased from Gibco (Dublin, Ireland). Lipofectamine 2000TM transfection reagent was purchased from Invitrogen™ via Thermo Scientific™ (Waltham, MA, USA).
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