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11 protocols using mouse anti tsg101

1

Extracellular Vesicle Protein Profiling

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The sEVs were lysed in a reagent containing a cocktail of protease inhibitors to extract proteins. These proteins were subjected to Western blotting assay using standard procedures. Briefly, after resolution by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE), proteins were electrotransferred to a cellulose nitrate membrane (Millipore), which was subsequently incubated at 4°C overnight with either mouse anti-CD63 (1:2000, Abcam), mouse anti-CD9, mouse anti-Tsg101, mouse anti-Alix (all diluted to 1:2,000, Abcam), or mouse anti-Calnexin (1:3,000, Abcam). The complex was then incubated with IRDye 680 secondary antibody, anti-rabbit, or anti-mouse for 1 h at normal laboratory temperature and then characterized by Odyssey infrared imaging system (LI-COR Biosciences).
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2

Protein Expression Analysis of Cell Lines

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The isolated tissues, cells, or EVs were treated with RIPA lysis buffer supplemented with the Protease Inhibitor Cocktail (Roche) at 4 °C for 30 minutes. The protein concentrations were assessed using the BCA Protein Assay Kit. Subsequently, equal amounts of purified proteins were separated using SDS-PAGE and transferred onto a nitrocellulose membrane in an ice bath. The nitrocellulose membrane was blocked with 5-8% nonfat dried milk for 1 h at room temperature, followed by overnight incubation with primary antibodies at 4 °C. The antibodies employed were mouse anti-CD81 (Abcam, ab79559), mouse anti-TSG101 (Abcam, ab83), rabbit anti-GM130 (Proteintech, 11308-1-AP), mouse anti-BAX (ProteinTech, 60267-1-Ig), rabbit anti-TfR (Proteintech, 10084-2-AP), rabbit anti-caspase-3 (Cell Signaling Technology, #14220), and mouse anti-GAPDH (Proteintech, 60004-1-Ig). The nitrocellulose membrane was subsequently incubated with corresponding secondary antibodies at room temperature for 1 h and visualized using the ECL Prime Western Blotting Detection Reagent (GE, UK).
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3

EV Protein Extraction and Analysis

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Protein extracts of EVs were obtained by unfrozen the RIPA-containing EVs samples, incubating for 1 h at 4 °C, and sonication. Protein extracts were loaded and separated by a 10% SDS-PAGE and transferred to PVDF membranes. For blocking, membranes were soaked in 5% non-fat dried milk in TBS-Tween20 (0.01%). Proteins were immunodetected using primary antibodies: mouse anti-CD9 (1:250; ref. 555370, BD Biosciences) and mouse anti-TSG101 (1:500; ref. ab83, Abcam). For the incubation with a secondary HRP-coupled antibody (rabbit anti-mouse Immunoglobulins/HRP, 1:2000, ref. P0260, Dako), PVDF membranes were firstly washed and then the incubated was performed. Finally, we revealed using the Immobilon Western Chemiluminiscent HRP Substrate (ref. WBKLS0100; Merck Millipore) and the intensity of the bands was quantified using the ImageJ software (v. 1.45 s).
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4

Sperm and Seminal Plasma Exosome Protein Extraction

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Total proteins were extracted from the sperm and the seminal plasma exosomes as previously described [65 (link)]. The protein concentrations were determined by a BCA Protein Assay Kit (Thermo Scientific, Rockford, IL, USA). Thirty milligrams of protein was separated on an 8% SDS-PAGE gel and then transferred to nitrocellulose membranes. The defatted milk was used to block the membranes for 2 h at room temperature and then the blocked membranes were incubated for 2 h with either a 1:1000 dilution of rabbit anti-alpha Tubulin (Abcam, Cambridge, MA, USA), a 1:1000 dilution of mouse anti-CD63 (Abcam), or a 1:200 dilution of mouse anti-TSG101 (Abcam). The washed blots were incubated for 90 min at room temperature with goat anti-mouse or anti-rabbit immunoglobulins (IgG) horseradish peroxidase (HRP) conjugated secondary anti-bodies (diluted 1:5000 in TBS containing 0.1% Tween-20 (TBST)). The antigen–antibody bands were scanned and visualized using a GS-700 imaging densitometer (Bio-Rad Laboratories, Hercules, CA, USA) and analyzed using Image Studio version 4.0 software (LI-COR Biosciences, Lincoln, NE, USA).
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5

Immunogold Labeling of Extracellular Vesicles

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The samples were mixed with 4% paraformaldehyde in phosphate buffer (pH 7.2) in a 1:1 ratio and then applied to 200-mesh Formvar carbon-coated nickel grids. After blocking with 5% normal donkey serum and washing with PBS, the grids were incubated with either goat anti-human DPP IV (1:100, AF1180, R&D Systems, Inc., Minneapolis, MN, USA) and mouse anti-Alix (1:100, 3C4, Abnova Corp., Taipei City, Taiwan) or goat anti-DPP IV (1:100, R&D Systems, Inc., Minneapolis, MN, USA) and mouse anti-TSG101 (1:100, 4A10, Abcam, Cambridge, MA, USA) primary antibodies overnight at 4 °C. The grids were then washed with PBS and exposed to 6 nm colloidal gold-conjugated donkey anti-mouse IgG (705-195-147, Jackson Immunoresearch, West Groove, PA, USA) and 12 nm colloidal gold-conjugated donkey anti-goat IgG (715-195-150, Jackson Immunoresearch) for 1 h at room temperature (20–25 °C). After washing, the grids were re-fixed in 1% glutaraldehyde-PBS, stained with 2% uranyl acetate (pH 7), and washed with distilled water. After drying, the grids were examined using TEM (JEM-1011, JEOL, Tokyo, Japan).
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6

Western Blot Analysis of Cell and Exosome Proteins

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For cell and exosome western blot, samples were lysed by RIPA buffer (Thermo Fisher Scientific, Waltham, MA, USA). The amount of protein was determined using a bicinchoninic acid protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). After protein transfer, the polyvinylidene fluoride (PVDF) membranes were blocked with 5% Difco skim milk (BD Biosciences, San Diego, CA, USA) in Tris-buffered saline containing 0.1% Tween-20 (TBST) for 1 h. Blots were incubated with primary antibodies overnight at 4°C. The primary antibodies used were as follows: rabbit anti-CD63 (1:1,000, Abcam, cat. ab217345; Cambridge, MA, USA), rabbit anti-GM130 (1:1,000, Abcam, cat. ab52649; Cambridge, MA, USA), rabbit anti-Lamp2b (1:2,000, Abcam, cat. ab199946; Cambridge, MA, USA), mouse anti-Alix (1:1,000, Cell Signaling Technology, cat. 2171; Danvers, MA, USA), mouse anti-Tsg101 (1:1,000, Abcam, cat. ab83; Cambridge, MA, USA), rabbit anti-GAPDH (1:1,000, Cell Signaling Technology, cat. 2118; Danvers, MA, USA). Corresponding horseradish peroxidase (HRP)-conjugated anti-mouse or anti-rabbit immunoglobulin G (IgG) (1:10,000, Pierce, Rockford, IL, USA) secondary antibodies were incubated for 1 h at room temperature. Bands were detected using an enhanced chemiluminescence (ECL) kit (Pierce, Rockford, IL, USA).
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7

Exosome Protein Profiling Protocol

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The following antibodies were used in our experiments: mouse anti-Hsp70 (Enzo Life Science), rabbit anti-NfkB (Santa-Cruz), mouse anti-CD63 (Millipore), mouse anti-Tsg 101 (Abcam), mouse anti-Annexin V (Santa-Cruz), and goat anti Histone H3 (Santa Cruz).
Exosome preparations from MM pool were obtained as described before. Samples were normalized for protein concentration (Bradford Assay) when possible (in alternative equal volumes of each sample were loaded on a acrylamide–bisacrylamide gel), boiled in reducing SDS sample buffer (80 mM Tris, pH 6.8, 2% SDS, 7.5% glycerol, 0.01% Bromophenol blue) supplemented with 2% 2-mercaptoethanol (Sigma) for 5 min at 95 °C and separated by SDS–PAGE on a acrylamide/bisacrylamide (10% or 12.5%) gel and analyzed by WB as previously described24 (link).
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8

Western Blot Analysis of Cellular Proteins

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Thirty micrograms of protein was separated on an 8% SDSPAGE gel and transferred to polyvinylidenedifluoride membranes (Millipore). Membranes were blocked and then incubated for 2 hours with either rabbit anti-alpha Tubulin (1:1000, Abcam), mouse anti-CD63 (1:1000, Abcam) or mouse anti-TSG101 (1:200, Abcam). Horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG was used as a secondary antibody (diluted 1:5,000 in TBST). Bands were scanned using a densitometer (GS-700; Bio-Rad Laboratories).
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9

Western Blot Analysis of Extracellular Vesicles

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Equal volumes of EV pellets were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then blotted onto PVDF membranes. The membranes were blocked with 5% milk for 1.5 h and incubated at 4°C overnight with primary antibodies: mouse anti-TSG101 (1: 1000, Abcam), rabbit anti-HSP70 (1: 1000, Abcam), mouse anti-CD63 (1: 1000, Abcam), and mouse anti-β-actin (1: 2000, Zsbio). The membranes were washed 3 times and then incubated with anti-rabbit or anti-mouse IgG antibodies (1: 4000, Zsbio) conjugated with peroxidase at room temperature for 1.5 h. The protein bands were visualized by enhanced chemiluminescence and were scanned using a luminescent image analyzer (GE Healthcare Bio-Sciences AB, Amersham Imager 600).
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10

Western Blot Analysis of Cellular and EV Markers

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Cells or EVs aliquots were lysed in RIPA buffer containing protease inhibitors (Sigma, Oakville, Canada). Equal amounts of proteins were resolved on 10% SDS-PAGE and transferred to a nitrocellulose membrane (BioRad). Membranes were blocked in TBS containing 5% non-fat dry milk and exposed overnight at 4 °C to mouse-anti-Vimentin (ab8978, Abcam), rabbit-anti-CDH1 (3195, Cell Signaling), Rabbit anti-GM130 (ab52649, abcam), Mouse anti-TSG101 (ab83, abcam), Mouse anti-Alix (2127, Cell Signaling), or mouse-anti-β-Actin (A5316, Sigma) antibodies. Membranes were washed in TBST (TBS-0.05% Tween-20) and incubated with either anti-rabbit or anti-mouse peroxidase-conjugated secondary antibody (Sigma) for 1 h at room temperature and the blots were developed using Immobilon Western HRP Substrate (Millipore).
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