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9 protocols using her2 erbb2

1

Reagents for Cell Signaling Studies

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Lipofectamine 2000® and TRIzol® were obtained from Invitrogen (Carlsbad, CA). Polybrene was purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA). Anti-HA antibodies, 17β-estradiol, 4-hydroxytamoxifen, and puromycin were purchased from Sigma (St. Louis, MO). Anti-actin was purchased from BD Bioscience (San Jose, CA). The ErbB2/HER2, ERα, and pSer118 ERα antibodies were purchased from Cell Signaling (Danvers, MA). LDE-225, LY2940002, and lapatinib ditosylate were purchased from Selleckchem (Houston, TX). Rapamycin was obtained from Fisher Scientific (Waltham, MA). Blasticidin S Hydrochloride was obtained from MP Biomedicals (Santa Ana, CA). 0.4% Trypan Blue Solution was purchased from Cellgro (Manassas, VA). Recombinant human Shh(C24II) was purchased from R&D Systems (Minneapolis, MN).
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2

Protein Expression Analysis in Myocardial Tissue

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Cytoplasmic and nuclear protein were extracted using the Nuclear and Cytoplasmic Protein Extraction Kit (Thermo Scientific). Myocardial protein extracts were resolved by SDS/PAGE and transferred onto a polyvinylidene difluoride membrane (Millipore). Membranes were blocked with 5% milk in Tris-buffered saline with Tween 20 for 2 h at 37 °C and then incubated overnight at 4 °C with primary antibodies. The primary antibodies used for all Western blots were ErbB2/HER2 (Cell signaling), phosphatidylinositol 3 kinase (PI3K, Cell signaling), phospho-PI3K (Cell signaling), protein kinase B (Akt, Cell signaling), phospho-Akt (Ser473) (Cell signaling), phospho-IκBα (Cell signaling), nuclear factor kappa B (NF-κB, Cell signaling), iNOS (Abcam), histone (Cell signaling), or β-actin (GTX-109639, GeneTex).
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3

Cryopreserved Cell Immunophenotyping Protocol

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The cryopreserved suspension was rapidly thawed. Cells were first filtered with a 70 µm filter, blocked with blocking buffer, and then stained with the appropriate conjugated antibodies for 30 min in the dark at 4° C. In some cases, cells were fixed using 10% formalin at 37° C prior to antibody staining. In unfixed cases, cells were counterstained with DAPI for viability. Antibodies were washed off with phosphate-buffered saline prior to flow cytometric analysis. Antibodies used were EpCAM/CD326 (BioLegend #324208, 1:20 dilution), CD45 (Biolegend #304034, 1:20 dilution), and HER2/ErbB2 (Cell Signaling #98710, 1:20 dilution). Gating strategies for the flow cytometric data are shown in Supplementary Fig. 2.
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4

Antibody and Protein Assay Protocol

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Anti-MSI2 (#ab76148), anti-MSI1 (#ab21628), and anti-β-actin HRP conjugated (#ab49900) antibodies and recombinant MSI2 protein (#ab167853) were obtained from Abcam, (Cambridge, UK). Anti-EGF receptor (#4267), phospho-EGFR (Y1068) (mAb #2234), HER3/ErbB3 (#12708), HER2/ErbB2 (#4290), Smad3 (#9523), phospho-AKT (T308) (#13038), total AKT (#2920), phospho-ERK (T202/Y204) (#4370), total ERK (#4696), phospho-p70S6K (T389) (#9234), total p70S6K (#2708), and normal Rabbit IgG (#2729) were obtained from Cell Signaling, (Danvers, MA). Erlotinib and afatinib were obtained from LC Laboratories (Woburn, MA), doxycycline from Sigma-Aldrich (D9891, Darmstadt, Germany). SUPERase-In RNAse inhibitor was obtained from Thermo Fisher Scientific, (AM2694 Waltham, MA). Osimertinib was obtained from Selleckchem (#S7297, Houston, TX)
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5

Comprehensive Immunoblot Analysis

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Immunoblot analysis was performed as previously described (7 (link)). Primary Abs against p-ERK1/2 T202/Y204 (catalog 4370), total ERK1/2 (catalog 4695), p-AKT S473 (catalog 4060), total AKT (catalog 9272), p-Rb S807/811 (catalog 8516), total Rb (catalog 9309), p-p90RSK T359/S363 (catalog 9344), RSK1 (catalog 8408), p-HER2/ErbB2 Y1221/1222 (catalog 2243), HER2/ErbB2 (catalog 2165), p-EGFR Y1068 (catalog 3777), cyclin D1 (catalog 2922), CDK4 (catalog 12790), CDK6 (catalog 13331), vinculin (catalog 18799), and β-actin (catalog 12620) were purchased from Cell Signaling Technology. Pierce HRP-conjugated secondary Abs (anti-rabbit and anti-mouse) were purchased from Thermo Fisher Scientific. Amersham ECL Prime chemiluminescent detection reagent (GE Healthcare Life Sciences) was used to visualize protein expression.
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6

Quantifying Molecular Markers in Cancer Cells

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IGFBP3, SPHK1 and CD44 mRNA expression was measured, in duplicate, on duplicate RNA extracts by qRT-PCR as previously described [13 (link)], using the following Taqman probes (Applied Biosystems, Foster City, CA, USA): IGFBP-3: Hs00181211_m1; SPHK1: Hs00184211_m1; CD44: Hs01075864_m1; and HMBS (reference gene): Hs00609297_m1. IGFBP-3 concentrations in cell-conditioned media were measured by in-house radioimmunoassay [13 (link)]. Western blotting was performed as described previously [13 (link)] using antibodies from Cell Signaling Technology (Beverly, MA, USA): total EGFR (#2232, 1:1,500), pEGFR (Tyr1068) (#2234, 1:1,500), HER2/ErbB2 (#2242, 1:1,000), type 1 IGF receptor (IGF1R, #3027, 1:1,000), p53 (#9282, 1:1,000), p63 (#4892, 1:1,000), CD44 (#3570, 1:1,500), vimentin (#3390, 1:1,000), E-cadherin (#3195, 1:1,000). SphK1 antibody (ab16491, 1:1,000) was from Abcam (Walnut, CA, USA) and α-tubulin antibody (T9026, 1:10,000) from Sigma-Aldrich, St Louis, MO, USA. Rabbit antihuman IGFBP-3 antiserum R-100 was raised in-house. Secondary antibodies were from Pierce Biotechnology (Rockford, IL, USA).
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7

Signaling Pathway Protein Analysis

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Antibodies to pAKT (cat# 4060), total AKT (cat# 9272), pEGFR(Y845) (cat #2231), pEGFR(Y1092), pEGFR (Y1068) (cat# 3777), pEGFR (Y1173), total EGFR (cat # 4267; # 2232), Her2/ErbB2, c-Met, pFAK, FAK, pErk1/2 (42/44) (cat # 9101; cat # 4370), Erk1/2 (42/44) (cat # 4695) and GAPDH (all from Cell Signaling), β-adaptin (BD Biosciences, cat # 610382), EEA1 (Ab70521), and Actin were from Abcam. total EGFR antibody (Sc-03) was from SantaCruz Biotechnology. The HRP-conjugated secondary antibodies were from Jackson ImmunoResearch. Recombinant human EGF (AF-100-15) was obtained from PeproTech, custom BUB1 siRNA, as well as non-silencing siRNA (NSS) were obtained from GE-Dharmacon. SD208 (Tocris), Erlotinib (gift from Genentech), Cetuximab (Bristol Myer Squibb), 2OH-BNPP1 was synthesized in-house as described by Jiang et al., [40 ].
Cycloheximide was obtained from Acros Organics/Fischer Scientific, while DSS was from ThermoFisher Scientific. FuGENE 6 was from Roche while Lipofectamine 2000 was from Invitrogen/ThermoFisher Scientific. ProLong Gold anti-fade mounting media (without DAPI) was purchased from Invitrogen/ThermoFisher Scientific.
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8

Immunoblotting Analysis of Cellular Proteins

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Cells were lysed in RIPA buffer. Equal amounts of total protein were resolved by SDS-PAGE, transferred to PVDF membranes (Millipore), and immunoblotted with the indicated primary antibodies. Membranes were hybridized with the following primary antibodies: p-Erk1/2, Erk1/2, p-HER3/ErbB3, HER3/ErbB3, HER2/ErbB2, p-AKT, AKT (Cell Signaling Technology), NIS, Tg, TPO, TSHR, GLUT1, and GLUT3 (Protein tech). Membranes were then hybridized with species-specific HRP-conjugated antibodies. Bands were visualized with Potent ECL kit (Beyotime).
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9

Immunoblotting Analysis of Cell Signaling

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All used primary antibodies for Chk1, phospho-Chk1 S345, Estrogen Receptor-α, phospho-Estrogen Receptor-α S118, HER2/ErbB2 and phospho-HER2/ErbB2 Y1248 were purchased from Cell Signaling (Frankfurt, Germany). Secondary antibodies anti-mouse IgG, HRP conjugated and anti-rabbit IgG, HRP conjugated, were purchased from Pierce (Bonn, Germany).
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