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4 protocols using normal melting point agarose

1

Autophagy-related protein quantification

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Dulbecco’s modified Eagle’s medium (DMEM) 4.5 g/L Glucose and fetal bovine serum (FBS) were from Dominique Dutscher (Brumath, France), Glutamax was from Life Technologies (Milano, Italy), trypsin-EDTA and penicillin/streptomycin were from Biowhittaker (Verviers, Belgium). Triton X-100, N-lauryl sarcosine, MD, Bafilomycin A1, and E64d-protease inhibitors were from SIGMA (St. Louis, MO, USA). Dimethyl sulfoxide (DMSO), NaOH, and Na2EDTA were from Baker (Deventer, The Netherlands). Tris and NaCl were from Carlo Erba (Milan, Italy). Normal-melting-point agarose, low-melting-point agarose, and ethidium bromide were from Bio-Rad Laboratories (GmbH, Munich, Germany). Nitrocellulose membranes for Western blotting were AmershamProtran™ 0.2 µm NC, Chicago, IL, USA. Antibodies used are rabbit anti-LC3 (#L7543, Sigma Aldrich, St. Louis, MO, USA), anti-ATG5 (A0731, Sigma Aldrich), Anti-ATG7 (clone D12B11, Cell signaling Technology, Danvers, MA, USA), and horseradish peroxidase-conjugated secondary antibodies from Jackson Immunoresearch. NP-40 was from Fisher Scientific (Illkirch, France). Western blots were revealed with Clarity Western ECL (Bio-Rad laboratories, Marnes-la-Coquette, France). Chemiluminescence was detected with a G:Box imaging system (Syngene, Cambridge, UK).
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2

Reagents for Cell Culture Experiments

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Dulbecco’s modified Eagle’s medium (DMEM), foetal bovine serum (FBS), L-glutamine, trypsin EDTA and penicillin/streptomycin were from Biowhittaker (Verviers, Belgium). Triton X-100, N-lauryl sarcosine and menadione were from Sigma (St. Louis, MO). Dimethyl sulfoxide, NaOH and Na2EDTA were from Baker (Deventer, The Netherlands). Tris and trypan blue were from BDH (Poole, England); NaCl was from Carlo Erba (Milan, Italy). Normal-melting-point agarose, low-melting-point agarose and ethidium bromide were from Bio-Rad Laboratories (GmbH, Munich, Germany). Ribospin kit and Riboclear plus were purchased by GeneAll Biotechnology CO, Ltd (Seoul, Korea). cDNA was obtained via reverse transcription (by OriGeneTechnologies, Inc. (Rockville, MD, USA). SensiFast SYBR-based kit was from Bioline (London, UK). Custom primers were synthetized by IDT Integrated DNA Technologies, Inc. (Coralville, IA, USA).
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3

Benzo[a]pyrene Cytotoxicity Assay

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B[a]P was purchased from Sigma (St. Louis, MO, USA). Collagenase 1A, PRMI-1640 medium and fetal calf serum (FCS) were purchased from Promega (Madison, USA). Normal melting point agarose and low melting point agarose were obtained from Bio-Rad (Hercules, CA, USA). All other chemicals were of analytical grade and were obtained from Sigma–Aldrich Chemical (Steinheim, Germany).
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4

Cytotoxicity and Genotoxicity Evaluation

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RPMI 1640, horse serum, fetal calf serum (FCS), non-essential amino acids and phosphate buffered saline (PBS) were purchased from GIBCO Invitrogen (Cergy-Pontoise, France). PolyLactic coGlycolic Acid copolymer (PLGA, Resomer® RG503H) was from Evonik (Essen, Deutschland). Benzo(a)pyrene, naphthalene, di-ethyl-hexyl phthalate, referred as ‘pollutant’ and H2-DCFDA, pyocyanine, giemsa reagent, penicillin, streptomycin, amphotericin B, cyclophosphamide (CPA, CAS No. 6055-19-2), mitomycin C (MitoC, CAS No. 50-07-7), methyl methane sulfonate (MMS, CAS No. 66-27-3), Triton X-100, EDTA, HEPES, trizma base, propidium iodide, KCl, NaCl, sodium bicarbonate, sodium pyruvate, pluronic F68 solution, Trypan Blue, bovine serum albumin (BSA) were obtained from Sigma-Aldrich (Saint-Quentin Fallavier, France). Normal melting point agarose and low melting point agarose were purchased from Bio-rad (Marnes-la-Coquette, France). Acetic acid was purchased from VWR (Fontenay sous-bois, France). Dimethyl sulfoxide (DMSO) from Acros Organics (Noisy le Grand, France). Trypsin was obtained from Biochrom AG (Berlin, Germany), while NaOH, L-glutamine and absolute ethanol were from Merck (Darmstadt, Germany). The repair endonuclease hOgg1 was purchased from New England Bio-Labs via Ozyme (Saint Quentin en Yvelines, France).
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