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5 protocols using phorbol 12 13 dibutyrate pdb

1

Quantifying Inflammatory Cell ROS Production

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ROS production was measured using L-012-enhanced chemiluminescence, as previously described (To et al., 2017 (link)). Inflammatory cells isolated from the BAL were seeded into a 96-well OptiView plate (5 × 104 cells/well) with Dulbecco’s Modified Eagle’s Medium (DMEM; Thermofisher, United States) containing 4.5 g/L of glucose, 110 mg of sodium pyruvate and 10% Fetal Bovine Serum (FBS; Sigma-Aldrich, United States), and allowed to adhere for 3 h prior to starting the assay. Cells were then washed with warm 37°C Krebs-HEPES buffer and exposed to a Krebs-HEPES buffer containing L-012 (10−4 mol/L) (WAKO Chemicals) in the absence (i.e., basal ROS production) or presence (stimulated ROS production) of the protein kinase C (PKC) and NADPH oxidase activator, phorbol 12,13-dibutyrate (PDB; 10−6 mol/L) (Sigma-Aldrich, United States). The same treatments were performed in blank wells (i.e. with no cells), which served as controls for background luminescence. All treatment groups were performed in triplicate. Photon emission [relative light units (RLU)/s] was detected using the BMGlabtech microplate reader (CLARIOstar, Germany) and recorded from each well for 1 s over 60 cycles. Individual data points for each group were derived from the average values of the three replicates minus the respective blank controls.
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2

Preparation and Storage of Pharmaceutical Compounds

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Aldara 5% (Meda®, Solnam, Sweden) was stored at room temperature, and weighed to 25 mg when required. Imiquimod (Invivogen, Thermo Fisher Scientific, Carlsbad, USA, cat. no. tlrl-imq) was dissolved in PBS at a concentration of 1 mM and aliquoted into tubes containing 0.5 mL. L-012 (WAKO chemical, Richmond, USA, cat. no. 120-04891) and phorbol 12,13-dibutyrate (PDB; Sigma Aldrich, St Louis, USA, cat. no. P1269-5MG) were dissolved in dimethyl sulfoxide (DMSO; Sigma Aldrich, St Louis, USA, cat. no. 472301; 100%) in 10 μL and 5 μL aliquots, respectively at a concentration of 10−2M. Chemicals were stored at −20 °C and quickly thawed when required.
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3

Preparation of Chemical Reagents for Cell Assays

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LPS (Invivogen, Thermo Fisher Scientific, Carlsbad, CA, USA) and 2-DG (Sigma-Aldrich, St. Louis, MO, USA, Cat no. D8375) were dissolved in H2O at a concentration of 1 mg/mL and 1 M, respectively. 6-aminonicotinamide (6-AN; Sigma-Aldrich, St. Louis, MO, USA, Cat no. A68203) was dissolved in dimethyl sulfoxide (DMSO; Sigma-Aldrich, St Louis, MO, USA, cat. no. 472301; 100%) at a concentration of 200 mM. L-012 (WAKO Chemicals, Richmond, MO, USA, cat. no. 120-04891) and phorbol 12,13-dibutyrate (PDB; Sigma-Aldrich, St Louis, MO, USA, cat. no. P1269-5MG) were dissolved in DMSO in 10 μL and 5 μL aliquots, respectively, at a concentration of 1 × 10−2 M. IFN antibody receptor 1 (IFNAR; Bio X cell, Lebanon, NH, USA, Cat no BE0241) was diluted 1:1000 in cell culture medium. Apocynin (Sigma-Aldrich, St. Louis, MO, USA, Cat no. A10809) was dissolved in DMSO at a concentration of 300 mM. Chemicals were stored at −20 °C and rapidly thawed when required, apart from 6-AN and Apocynin, which were freshly prepared before each use.
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4

Protein Interactions in HEK293 and HeLa Cells

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HEK293 and HeLa cell lines were grown in Dulbecco's modified eagle medium (DMEM) supplemented with 10% (v/v) Fetal Bovine serum (GE Healthcare, Little Chalfont, UK), 2 mM glutaMAX (ThermoFisher Scientific, Waltham, MA, USA), 100 U/ml Penicillin and 100 µg/ml Streptomycin (ThermoFisher scientific). Anti-GST, Anti-FLAG M2 antibody, HA antibody and agarose resins were purchased from Sigma (St. Louis, MO, USA). Glutathione sepharose 4B beads were from GE healthcare (Little Chalfont, UK). GFP trap beads were from Chromotek (Planegg, Germany). Anti-phosphotyrosine antibody (4G10) was from Millipore (Billerica, MA, USA), PKD anti-pSer-744/748 antibody, anti-PKCδ antibody, secondary HRP-linked goat anti-Rabbit and Horse anti-Mouse antibodies were from Cell Signaling Technologies (Beverly, MA, USA). Phorbol 12,13-dibutyrate (PDB), ATP, Neurotensin, Bradykinin, Lysophosphatidic acid, STI-751, PP2, DPH and Hydrogen peroxide 30% (v/v) were from Sigma (St. Louis, MO, USA). Gö 6983 was from Selleckchem (Munich, GE). Polyethyleneimine (PEI) was from Polysciences Inc. (Warrington, PA, USA).
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5

Fluorescent IgE labeling and cellular assays

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MEM, Opti-MEM, Trypsin-EDTA (0.01%), and gentamicin sulfate were purchased from Life Technologies (Carlsbad, CA). Fetal bovine serum (FBS) was purchased from Atlanta Biologicals (Atlanta, CA). Alexafluor 488 (AF488) NHS ester (Invitrogen) was used to label monoclonal anti-DNP immunoglobulin E (IgE) as described previously (Larson et al., 2005 ). Cytochalasin D (CytoD) and phorbol 12,13-dibutyrate (PDB) were obtained from Sigma-Aldrich (St. Louis, MO). Stock solutions of PDB and CytoD were prepared in dimethylsulfoxide (DMSO) and stored at -80°C.
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