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6 protocols using alexa647 foxp3

1

Expansion and Characterization of Regulatory T Cells

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Tregs were isolated as reported previously19 and sorted for CD4+CD25highCD127low phenotype. Purity of the isolated Tregs was verified by intracellular staining with anti–forkhead box P3 (FOXP3)–Alexa647 according to the manufacturer's instructions (BioLegend, San Diego, CA). Polyclonal expansion ensued by culture in 96‐well round bottom plates with 1‐2 × 105 cells/well in supplemented RPMI1640 with CD3/CD28‐expanderbeads (Dynabeads, Invitrogen, Carlsbad, CA; initial ratio to cells 4:1) and 300 U/mL interleukin (IL) 2. Bead:cell ratio was reduced to 1:1 on day 10 and further to 1:4 on day 20. Medium was changed every second day, and populations split after 5‐7 days. Following expansion for 14‐28 days, Tregs were used in mixed lymphocyte culture (MLC)/mixed lymphocyte hepatocyte culture (MLHC) experiments. The purity of the expanded Tregs was ascertained by intracellular FOXP3 staining as described above.
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2

Flow Cytometric Analysis of Regulatory T Cells

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The following anti-human antibodies were used: CD4-PE/Cy5, CD25-FITC, and Foxp3-Alexa647 from BioLegend (San Diego, CA, USA). Mouse cells were stained with fluorochrome-labeled mAbs to CD4-Pacific Blue, Brilliant Violet 605 and Alexa-700 (RM4-5), CD8-Pacific Blue (53-6.7), CD25-APC (7D4), Ki-67-PE (Ki-67), and Thy1.1-PercP (Ox-7) from BioLegend. Foxp3-APC (FJK-16s), dead cell marker Viability Dye eFluor™ 780, and staining reagents from eBioscience (San Diego, CA, USA) were used according to the manufacturer’s instructions. To analyze expression of surface proteins, the cells were stained with the appropriate antibodies for 20 min at 4°C, washed once with FACS buffer (PBS, 0.1% BSA, and 0.02% NaN3), and fixed with 2% paraformaldehyde. For intracellular staining of Foxp3 and Ki-67, the cells were first surface stained, permeabilized with Fix/Perm (eBioscience), and stained with Foxp3 and Ki-67 antibodies diluted in Perm/Wash (eBioscience). To calculate absolute Treg numbers, unlabeled microbeads (BD Biosciences, Franklin Lakes, NJ, USA) were added to the stained cells and the following formula was used: absolute Treg numbers = (beads used × Treg events)/beads measured. Acquisition was performed on a BD™ LSR II or FACSCalibur, and data were analyzed using FlowJo software (TreeStar Inc., Ashland, OR, USA).
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3

Isolation and Differentiation of Murine Tregs

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CD45.2+CD4+ T lymphocytes were sorted from chimeras and differentiated with 10 μg/ml plate coated anti-CD3, 2 μg/ml soluble anti-CD28 and 10 ng/ml TGF-β for five days and analyzed. Thymocytes, lymph node, splenocytes or in vitro differentiated Treg cells were stained with anti-CD4 and anti-CD25 surface markers, then fixed and permeabilized with Fix/Perm buffers (Biolegend) and stained with Alexa647-FoxP3 (Biolegend).
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4

Multiparameter Flow Cytometry Profiling

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Flow cytometry was performed on single cell suspensions using these mouse antibodies; PerCp-CD4, Alexa-488-CD4, Alexa-647-FoxP3, PE-IL17A, FITC-CD25, PE-PD1 (Biolegend), PE-FoxP3, PC-IL17, FITC-CD25, APC-CD11b, FITC-PDL2, PE-PDL1 (eBiosciences). Flow cytometry was run on an Accuri benchtop C6 cytometer and analysed using FlowJo™ software. For all analyses unless otherwise stated, samples were gated on lymphocyte populations based on size, as assessed by SSC and FSC, followed by gating for CD4 positivity. Intracellular staining was performed by fixation and permeabilization using eBioscience Fix-Perm Intracellular staining buffers (Cat. Num 8222-49 and 8333-56). Staining was performed for 1 hour at room temperature followed by washing in FACS buffer (2% FCS (Hyclone), in PBS (Gibco)) Analyses were performed using FlowJo™ and data statistically tested using GraphPad Prism™ software, with tests described in respective figure legends.
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5

Comprehensive T-cell Immunophenotyping Protocol

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Flow cytometric analyses of T-cell markers was performed using the following antibodies, mouse samples (PerCp-CD4 (Biolegend), FITC-CD25, PE-FoxP3, FITC-IFNg, APC-IL17 (eBiosciences), or human samples (PE-IL17, Alexa647-FoxP3, (Biolegend), PerCpCy5.5-CD4, FITC-IFN-g (eBiosciences) on an Accuri benchtop C6 cytometer. For all analyses unless otherwise stated, samples were gated on lymphocyte populations based on size, as assessed by SSC and FSC, followed by gating for CD4 positivity. Intracellular staining was performed by fixation and permeabilization using eBioscience Fix-Perm Intracellular staining buffers (Cat. Num 8222–49 and 8333–56). Staining was performed for 1 hour at room temperature followed by washing in FACS buffer (2% FCS (Hyclone), in PBS (Gibco)) Analyses were performed using FlowJo and data statistically tested using GraphPad Prism software, with tests described in respective figure legends.
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6

Generating Collagen-Specific T Cell Tetramers

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PE-conjugated MOG tetramer as well as biotinylated DR1 monomers were ordered from NIH Tetramer Core Facility (Atlanta, GA). PE-conjugated DR1/Collagen II (280–294) tetramers were created in-house using the CLIP/DR1 monomers and a NIH Tetramer Core Facility protocol. Briefly, the process involved cleavage of the CLIP peptide from the DR1 monomer and an exchange reaction with the collagen II (289–294) peptide. For the flow cytometry experiment, Brilliant Violet 421-CD44, Alexa Fluor 700-CD4, PE-Cy7-CD8, FITC-CD3, BV421-CD25, Alexa647-Foxp3, APC-B220, APC-CD11c, PE-Cy7-CD69, and APC-F4/80 from Biolegend (San Diego, CA) and fixable viability dye eFluor 780 from eBioscience (San Diego, CA) were used.
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