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8 protocols using hifair 1st strand cdna synthesis kit

1

Quantification of Zscan4 and Zfp352 Expression

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Total RNA was extracted from 50 oocytes or 5 × 105 cells using the TRIzol reagent (Invitrogen, United States), following the manufacturer’s instructions, and cDNA synthesis was completed using the Hifair 1st Strand cDNA Synthesis Kit (Yeasen Biotechnology Co., Ltd., China). RT-PCR was performed with the SYBR Green Master Mix (Yeasen Biotechnology Co., Ltd., China) with the ABI 7500 Real-Time PCR system (Applied Biosystems, United States). Mouse Zscan4 (Forward: 5′- GAG​ATT​CAT​GGA​GAG​TCT​GAC​TGA​TGA​GTG-3′ and Reverse: 5′- GCT​GTT​GTT​TCA​AAA​GCT​TGA​TGA​CTT​C-3′), Zfp352 (Forward: 5′- ACC​ACC​TCA​AAG​AAC​ACC​AG-3′ and Reverse: 5′- ACA​AGG​GAC​AAG​CGT​AGA​AC-3′), were normalized against Gapdh (Forward: 5′-TCT​TCC​AGG​AGC​GAG​ACC​C-3′ and Reverse: 5′-CGG​AGA​TGA​TGA​CCC​TTT​T-3′), and the quantification of the fold change was determined by the comparative CT method.
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2

Quantifying Gene Expression in Cervical Cancer

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Human cervical cancer cells (HeLa and SIHa) were purchased from the China Center for Type Culture Collection. Cells were maintained in DMEM (Servicebio, China) complete medium with 100 U/mL penicillin/streptomycin (YEASEN Biotech Co. Ltd., China) and 10% fetal bovine serum (FBS; YEASEN Biotech Co. Ltd.) at 37°C in a humidified atmosphere containing 5% CO2. Total RNA was extracted from the synovial membrane using TRIzol reagent, and cDNA synthesis was performed with a Hifair 1st Strand cDNA Synthesis kit (YEASEN Biotech Co., Ltd.) according to the manufacturer's protocol. Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was performed using Hieff qPCR SYBR Green Master Mix (YEASEN Biotech Co. Ltd.), and the gene expression levels were detected by an ABI 7500 Real-Time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc., USA). Relative mRNA expression was calculated with the 2−ΔΔCT method compared to GAPDH expression. The primers are listed in Supplementary Table S1.
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3

Quantitative Analysis of DPM Genes

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TRIeasy™ Total RNA Extraction Reagent (Yeasen, Shanghai, China) was used for total RNA extraction, and then the total RNA was reverse transcribed to cDNA with the Hifair® 1st Strand cDNA Synthesis Kit (Yeasen, Shanghai, China) according to the product instruction. Hieff UNICON®Power qPCR SYBR Green Master Mix (Yeasen, Shanghai, China) was used to conduct RT-qPCR experiment on a Bio-Rad CFX96 System (Bio-Rad, Hercules, CA, USA). The reaction conditions were as follows: pre-denaturation at 95 °C for 30 s, followed by 40 cycles of amplification at 95 °C for 10 s and 60 °C for 30 s. Relative mRNA expression levels of DPM1/2/3 were measured based on the 2ΔΔCt method with 18S used for normalization. The significance of expression analysis was completed using Student’s t-test. Table 2 showed the primers we used in this study.
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4

Validation of Pollen-Associated Gene Expression by qRT-PCR

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First-strand cDNA was obtained by reverse transcription of total RNA using the Hifair®1st Strand cDNA Synthesis kit (Yeasen, Shanghai, China) kit, and the Roche LightCycler 480® real-time PCR instrument (Roche Applied Science, Switzerland) was used for qPCR. A 20 μL reaction system with 50 cycles was designed with the reference (Ni et al., 2021 (link)); UBQ was used as an internal reference gene, and the 2-ΔΔCT method (Lin and Lai, 2010 (link)) was used to calculate relative expression, and six differentially expressed pollen-associated genes were randomly selected for validation by qRT-PCR. All primers used in this study were listed in Supplementary Table S1.
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5

Quantification of Oocyte Gene Expression

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Total RNA was extracted from 50 oocytes using TRIzol reagent (Invitrogen, USA) following the manufacturer’s procedure and cDNA synthesis was completed using Hifair 1st Strand cDNA Synthesis Kit (Yeason, China). RT-PCR was performed with SYBR green master mix (Yeason, China) with ABI 7500 Real-Time PCR system (Applied Biosystems, USA). Mouse Ezh2 (Forward: 5’-GAGTGGAAGCAGCGGAGGAT-3’, Reverse: 5’-TGTAAGGGCGACCAAGAGTA-3’), Cps1 (Forward: 5’- TTCCCTCTGACTATGTTGCC-3’, Reverse: 5’- TTGAGCCAGTCTGATGTAGC-3’), Yy1 (Forward: 5’- GGGATACCTGGCATTGACCT-3’, Reverse: 5’- CACTCTGCACAGACGTGGACT-3’), and Xist (Forward: 5’- TGGTTCGTCTATCTTGTGGGTC-3’, Reverse: 5’- CTGGGAGAACTGCTGTTGTGAT-3’), was normalized against mouse β-actin (Forward: 5’- GGCTGTATTCCCCTCCATCG -3’, Reverse: 5’- CCAGTTGGTAACAATGCCATGT -3’). Quantification of the fold change was determined by the comparative CT method.
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6

Transcriptional Analysis of DNAH17 Expression

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Total RNA was isolated using Trizol reagent (Invitrogen, Carlsbad, CA, USA) according to the specification, and 1 μg RNA was then reversely transcribed to cDNA with Hifair™ 1st Strand cDNA Synthesis Kit (Yeasen, Shanghai, China, Cat# 11123ES10). Quantitative real‐time PCR was performed with Hifair™ qPCR SYBR Green Master Mix (Yeasen, Cat# 11201ES08). qRT‐PCR was performed by a 7500 RT‐PCR system (Thermo Fisher Scientific, Waltham, MA, USA), and the annealing temperature was 55°C. GAPDH served as a normalizing control. The qPCR primers for DNAH17, forward primer, 5′‐TTACACCAACGTCACTGAAGGG‐3′ and reverse primer, 5′‐AGTCGGCTTGTTCCATCTCCT‐3′; for GAPDH, forward primer, 5′‐GTGAAGCAGGCGTCGGA‐3′ and reverse primer, 5′‐AGCCCCAGCGTCAAAGG‐3′. The range of the obtained Ct values was 15‐30. Each sample was tested in triplicate. The 2−ΔΔCT as a calculation method was performed to analyze the expression of DNAH17 gene in the selected cell lines after decitabine treatment.
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7

Cardiac Tissue RNA Extraction and qPCR Analysis

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The total RNA from cardiac tissue was prepared using TRIzol (Thermo Fisher, USA) following the manufacturer's protocols for RT-qPCR. Synthesis of cDNA and qPCR were determined using Hifair® 1st
Strand cDNA Synthesis kit and SYBR Green Master Mix kit (YEASEN, China). The amount of TNF-α, IL-1β and IL-6 mRNA was normalized to the expression of β-actin. All of the primers were synthesized by Beijing Dingguo Changsheng Biotechnology Co. Ltd. The following primers were used: TNF-α forward 5'-GTCGTAGCAAACCACCAAGC-3', reverse 5'-TGTGGGTGAGGAGCACGTAG-3'; IL-1β forward 5'-GCAATGGTCGGGACATAGTT-3', reverse 5'-AGACCTGACTTGGCAGAGG-3'; IL-6 forward 5'-AGTGCATCATCGCTGTTCATACA-3', reverse 5'-ATATGTTCTCAGGGAGATCTTGGAA-3'; β-actin forward 5'-GATCAAGATCATTGCTCCTCCTG-3', reverse 5'-AGGGTGTAAAACGCAGCTCA-3'. Fold changes in the target gene expression were calculated by the relative quanti cation method (2 -∆∆CT ).
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8

Cardiac Tissue RNA Extraction and qPCR Analysis

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The total RNA from cardiac tissue was prepared using TRIzol (Thermo Fisher, USA) following the manufacturer's protocols for RT-qPCR. Synthesis of cDNA and qPCR were determined using Hifair® 1st
Strand cDNA Synthesis kit and SYBR Green Master Mix kit (YEASEN, China). The amount of TNF-α, IL-1β and IL-6 mRNA was normalized to the expression of β-actin. All of the primers were synthesized by Beijing Dingguo Changsheng Biotechnology Co. Ltd. The following primers were used: TNF-α forward 5'-GTCGTAGCAAACCACCAAGC-3', reverse 5'-TGTGGGTGAGGAGCACGTAG-3'; IL-1β forward 5'-GCAATGGTCGGGACATAGTT-3', reverse 5'-AGACCTGACTTGGCAGAGG-3'; IL-6 forward 5'-AGTGCATCATCGCTGTTCATACA-3', reverse 5'-ATATGTTCTCAGGGAGATCTTGGAA-3'; β-actin forward 5'-GATCAAGATCATTGCTCCTCCTG-3', reverse 5'-AGGGTGTAAAACGCAGCTCA-3'. Fold changes in the target gene expression were calculated by the relative quanti cation method (2 -∆∆CT ).
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