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5 protocols using cxcr4 pe

1

Isolation and Analysis of Hematopoietic Stem Cells

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c-KIT-positive cells were enriched using a magnetic separation system (MACS) with anti-c-KIT magnetic beads (Miltenyi Biotec). The enriched cells were stained with c-KIT-APC (2B8, BioLegend), SCA-1-PE (E13–161.7, BioLegend), and lineage antibody cocktail (CD3, B220, CD11b, Gr-1, and Ter119; all from BD) conjugated with PE-Cy5. Dead cells were excluded using 7-amino-actinomycin-D staining. For the analysis of CXCR4 protein expression, c-KIT-enriched BM cells were stained with CXCR4-PE (2B11, eBioscience) or Isotype Control (eB149/10H5, eBioscience) together with CD48-FITC (HM48-1, BioLegend), CD150-PE-Cy7 (TC15-12F12.2, BioLegend), c-KIT-APC-eFluor780 (2B8, Fisher Scientific), SCA-1-Brilliant Violet 421 (D7, BioLegend), and lineage antibody cocktail conjugated with PE-Cy5. CD150+CD48 within LSK cells were defined as HSCs (Kiel et al., 2005 (link)). Cells were sorted on FACSAria III or FACSAria IIu and analyzed on FACS Fortessa, LSRII, or FACSCanto II (BD). Collected data were analyzed with FlowJo software (Tree Star).
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2

Flow Cytometry Analysis of Cell Markers

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Flow cytometry analysis of surface markers was performed as previously described [43 (link)]. Intracellular staining was performed by using Fixation/Permeabilization Solution Kit (BD Pharmingen), where cells were incubated with primary antibody over night, followed by washing and then incubated with secondary antibody for 2 h. Cells stained with secondary antibodies alone were used as control for gating. The following antibodies were used: CD166-PE, CD9- FITC, CXCR4-PE, m/hCD44-APC (eBioscience, San Deigo, CA), CD133/2-PE and anti-m/hAPC-A2B5 (Miltenyi, Billerica, MA).
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3

Characterization of Aged Neutrophils

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Peripheral blood was lysed with ACK lysing buffer (Gibco, Cat# A1049201) and the nucleated cells were stained with the following conjugated monoclonal antibodies: CD62L-APC, CD115-PE-Cy7, CXCR4-PE, and Gr-1-FITC (all from eBioscience, USA). Flow cytometry was carried out on the Moflo XDP Sorter (BD Biosciences). Dead cells were excluded by FSC, SSC and Propidium iodide. Neutrophils were gated by Gr-1hi CD115lo SSChi and aged neutrophils gated by CD62Llo CXCR4hi within the neutrophil population.
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Multiparameter Flow Cytometry Analysis

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Antibodies used for analysis were anti-human CD11c APC, CD80 FITC, CD83 FITC, HLA-DR FITC, CD40 PE, CD86 PE, TLR-2 PE, CXCR4 PE, CCR7 PE, CD4 PECy7, and IFN-γ APC (all from eBioscience). Cells were resuspended in PBS supplemented with fetal bovine serum (FBS) (HyClone Thermo Scientific, Logan, UT, USA), stained with specific antibodies, fixed with IC fixation buffer (eBioscience) and resuspended in FACSFlow buffer (Becton Dickinson, San Diego, CA, USA) for subsequent analysis. Data were acquired on a FACSAria III with FACSDiva v6.1.3 software (both Becton Dickinson) and analyzed by FlowJo software (Treestar, USA).
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5

Flow Cytometry Analysis of CAR Expression

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The following antibodies were used for flow cytometric analysis: EpCAM-APC (324208, BioLegend), mCD45-PE-CY7 (103114, BioLegend), hCD45-PE (555483, BD), CD45-PerCP-CY5.5 (558714, BD), CXCR4-PE (12–9999–42, eBioscience), p-mTOR Ser2448-PE (583489, BD), p-S6 Ser235/236-APC (14733S, CST), CD3-BV421(317344, BioLegend), and CD33-PE (555450, BD). Cells isolated from animals or cell lines cultured in vitro were washed once in PBS supplemented with 2% FBS (Gibco), and after blocking by Fc receptors, stained at 4°C for 30 minutes in the dark, washed twice with PBS, and then tested. For intracellular staining, cells were first fixed and permeabilized with Foxp3/Transcription Factor Staining Buffer (eBioscience) and then antibody staining was performed. The surface expression of EpCAM CAR was detected by staining with goat anti-mouse F(ab')2 antibody conjugated with Alexa Fluor 647 from Jackson ImmunoResearch. BD LSRII flow cytometry was used for detection, and FlowJo was used for analysis.
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