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2 protocols using rabbit anti h3k9me3

1

Histone Demethylase Regulation Assay

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Rabbit anti-KDM4A, anti-ERK1/2, anti-p-ERK1/2 (T202/Y204), anti-c-Jun, and anti-p-c-Jun (S63) were purchased from Cell Signaling Technology (Danvers, MA, USA). Rabbit anti-KDM4B was purchased from Bethyl Laboratories (Montgomery, TX, USA). Rabbit anti-KDM4C was purchased from Novus Biological (Littleton, CO, USA). Rabbit anti-H3K9me3 was purchased from Active Motif (Carlsbad, CA, USA). Rabbit anti-IgG, and anti-p-Tyrosine were purchased from Millipore (Billerica, MA, USA). Mouse anti-CagA, and anti-IgG were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Mouse anti-β-Actin was purchased from Sigma. Lentiviral vector pLKO-control (pLKO), pLKO-shKDM4A (sh4A#1, TRCN0000234912; sh4A#2, TRCN0000234914), -shKDM4B (sh4B#1, TRCN0000018016; sh4B#2, TRCN0000379460), -shKDM4C (sh4C#1, TRCN0000235047; sh4C#2, TRCN0000235048) plasmids were purchased from The RNAi Consortium (TRC).
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2

ChIP Assay in J-Lat A2 Cells

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J-Lat A2 cells were fixed with 1% formaldehyde for 10 min at room temperature, and ChIP assays were performed using the ChIP-IT Express Enzymatic kit (Active Motif 53009) according to the manufacturer’s protocol. For each ChIP reaction, 2 μg of the following antibodies were used: control rabbit IgG (Bethyl P120–101), rabbit anti-H3 (Invitrogen PA5–31954), rabbit anti-H4 (Invitrogen 720166), rabbit anti-H3K9me3 (Active Motif 39765), rabbit anti-H3K27me3 (Active Motif 39155), rabbit anti-Ac-H3 (Millipore 06–599), rabbit anti-Ac-H4 (Millipore 06–598), rabbit-anti-H4K5,8,12Ac (Invitrogen pa5–40083), mouse-anti-H4K16Ac (Invitrogen MA5–27794), rabbit anti-Brd4 (Thermo Fisher 702448), mouse anti-FLAG (Sigma F1804), rabbit anti-KAT8 (Active Motif 61245), rabbit anti-BRG1 (Cell Signaling 49360), and rabbit anti-ARID1A (Cell Signaling 12354). qPCR was performed with the primers listed in Table S1. Signals obtained by qPCR were normalized to those of input DNA, and the averages from triplicate qPCR reactions were used to generate standard deviation depicted by error bars. Two-tailed Student’s t-tests were conducted, and the different significance levels were marked by 1–3 asterisks (*: p < 0.05, **: p < 0.01, and ***: p < 0.001).
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