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Sinegative

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom

The SiNegative is a laboratory equipment product. It is designed to serve as a silicon negative reference material. The core function of the SiNegative is to provide a consistent and standardized reference for analytical procedures involving silicon measurements.

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5 protocols using sinegative

1

STAT3 Silencing in Endothelial Cells

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BCE and BAE cells were plated onto six‐well culture plates at a density of 1.5 × 105 cells/well and cultured overnight. Two milliliter of antibiotics‐free culture medium was used to replace the old medium. siRNAs, including siNegative (Ambion, CAT# AM4611), siSTAT3‐915 (Invitrogen, CAT# 361146C04), siSTAT3‐1492 (Invitrogen, CAT# 361146C05), and siSTAT3‐454 (Invitrogen, CAT# 384235A10), were mixed with Lipofectamine RNAiMAX reagent (ThermoFisher Scientific, CAT# 13778150) in Opti‐MEM™ I Reduced Serum Medium (Gibco, CAT# 31985062) according to manufacturer’s instructions. Briefly, a mix containing 25 pmol of siRNA, 7.5 μl of RNAiMAX reagent, and 125 μl of Opti‐MEM medium was used to transfect cells in each well, which makes a final siRNA concentration of 12.5 nM. A mix of RNAiMAX and Opti‐MEM was used as no siRNA control. Cells were incubated with siRNAs for 8 h and then cultured in fresh medium. Twenty‐four hours after transfection with siRNAs, cells were used for EC proliferation assays and RNA/protein extraction.
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2

Silencing JNK1 and JNK2 in BCECs

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BCECs were plated in 6-well culture plates at a density of 1.5 × 105 cells/well and cultured overnight. Two milliliters of antibiotics-free culture medium was used to replace the old medium. siRNAs, including siNegative (Ambion, AM4611), siRNA against JNK1#2 (Invitrogen, NM_001192974.2_siRNA_266), JNK1#4 (Invitrogen, NM_001192974.2_siRNA_485), siRNA against JNK2#2 (Invitrogen, XM_005208371.4_siRNA_1240), and JNK2#4 (Invitrogen, XM_005208371.4_siRNA_696), were mixed with Lipofectamine RNAiMAX reagent (ThermoFisher Scientific, 13778150) in Opti-MEM™ I Reduced Serum Medium (Gibco, 31985062) according to manufacturer’s instructions. Briefly, a mix containing 25 pmol of siRNA, 7.5 μl of RNAiMAX reagent, and 125 μl of Opti-MEM medium was used to transfect cells in each well, to a final siRNA concentration of 12.5 nM. A mix of RNAiMAX and Opti-MEM was used as no siRNA control. Cells were incubated with siRNAs. Eight hours later, the siRNA-containing medium was replaced with fresh medium. Twenty-four and/or 48 h after transfection with siRNAs, cells were used for proliferation assays and protein extraction.
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3

Nrf2 Knockdown in Astrocytes

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Small interfering RNA (siRNA) targeting Nrf2 (si-Nrf2), and negative scramble control siRNA (si-Negative) were purchased from Thermo Fisher Scientific (USA). C8-D1A astrocytes were cultured in complete medium in 6-well plates for 48 h, and then transfected with either Nrf2 siRNA or Nrf2-negative siRNA using Lipofectamine RNAi MAX (Invitrogen, Waltham, MA, USA). After 24 h, the transfected cells were exposed to OGD/R for 4 h before Western blotting and further analysis.
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4

Dkk3 Silencing in Cell Lines

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Cells (HAC and SW1353) were transfected with 2.5 nM of siRNA
against Dkk3 (Qiagen, siDkk3) or Allstars non-targeting negative control
(Qiagen, siNegative) using Dharmafect (Thermoscientific, UK) according to
manufacturer's instructions. Cells were transfected 48 h prior to cytokine
treatment.
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5

Knockdown of Regulatory Genes in Jurkat Cells

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The following siRNAs were purchased from Thermo Fisher: siNegative (4390843), siNFKBIA (s9512), siPSMD3 (s11393), siMINA (s39524), siUCHL5 (s28048), siINTS2 (s33184), siTMEM178A (s43535), siNICN1 (s38792), siFTSJ3 (s42146). For every 106 Jurkat 2D10 cells 30 pmol siRNA was introduced using SE Cell Line 4D-Nucleofector X Kit L (Lonza V4XC-1024) according to the manufacturer's protocol (program CL-120) on a 4D-Nucleofector X Unit (Lonza AAF-1002X). Two days after nucleofection, 106 cells were subjected to flow cytometry and RT-qPCR assays as described above, and 3 × 106 cells were subjected to ChIP assays as described below.
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