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67 protocols using ab170099

1

Protein Expression Analysis in SRA01/04 Cells

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Western blot assay was used to detect protein expression levels in SRA01/04 cells. Proteins were extracted using RIPA total protein lysate (Cat. No. P0013C, Beyotime, China) and separated by electrophoresis on 10% SDS-PAGE, then blotted onto PVDF membranes (Cat. No. FFP39, Beyotime, China). After incubation with blocking solution (Cat. No. P0252, Beyotime, China), PVDF membranes were probed with anti-p53, anti-Bax, anti-Bcl-2, anti-p-p44/42, anti-p44/42, anti-p-JNK, anti-JNK, anti-p-p38, anti-p38, and anti-GAPDH antibodies (Cat. No. ab32389, ab32503, ab32124, ab278538, ab184699, ab124956, ab179461, ab178867, ab170099, ab9485, Abcam, USA, 1:1000) at 4°C overnight. After washing, the blots were incubated with an HRP-conjugated Goat Anti-Rabbit IgG H&L secondary antibody (Cat. No. ab6721, Abcam, USA, 1:2000) for 1 h and treated with the ECL Western Blot Reagent (Cat. No. P0018S, Beyotime, China) with a chemiluminescent imaging system (ChemiDoc MP, Bio-rad, USA).
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2

Analyzing IL-6-induced Transcription Factor Phosphorylation

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To analyze the IL-6-induced phosphorylation of transcription factors, LF fibroblasts grown in a 6-well plate were incubated for 15 min with IL-6 (300 ng/ml) and lysed in radioimmmunoprecipitation assay buffer (Nacalai Tesque). The lysates were homogenized in sample buffer solution containing 2-mercaptoethanol (2×) (Nacalai Tesque) and proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a nitrocellulose membrane (Invitrogen) that was blocked in blocking reagent (Block-Ace; DS Pharma Biomedical, Osaka, Japan) for 30 min at 25 °C and treated overnight at 4 °C with the following primary antibodies: anti-human STAT3 (mouse monoclonal, 1:500, SC-8019) and p-STAT3 (1:500) (both from Santa Cruz Biotechnology); and anti-human ERK1/2 (mouse monoclonal, 1:1000, AB54230), p-ERK1/2 (1:1000), p38 (rabbit monoclonal, 1:1000, AB170099), p-p38 (1:1000), JNK (rabbit polyclonal, 1:500, AB112501), and p-JNK (1:500) (all from Abcam). The membrane was then incubated with horseradish peroxidase-conjugated goat anti-mouse IgG (Santa Cruz Biotechnology) for 1 h at 25 °C and immunoreactivity was visualized with Chemi-Lumi One Super (Nacalai Tesque) and a luminescent image analyzer (EZ-capture2; ATTO, Tokyo, Japan) and quantified using ImageJ v.1.47 software (National Institutes of Health, Bethesda, MD, USA).
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3

Western Blot Analysis of RAP1B, p38, and p-p38

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Tca8113 and CAL-27 cells were lysed using RIPA lysis buffer (Solarbio) and estimated using a BCA protein assay kit (Solarbio). Denatured proteins were resolved using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE, Solarbio), and protein bands were transferred to a polyvinylidene fluoride membrane, blocked with 5% bovine serum albumin (Solarbio), and incubated overnight (4°C) with RAP1B (1 : 500; ab154756, Abcam, Cambridge, UK), p38 (1 : 1000; ab170099, Abcam), and p-p38 (1 : 1000; ab178867, Abcam) primary antibodies. Thereafter, the sections were rinsed with TBST buffer (Solarbio; containing 0.05% Tween 20) twice for 15 min and incubated with goat anti-rabbit antibody (1 : 20,000, ab205718; Abcam) for 2 h at 25°C. Anti-GAPDH antibody (1 : 5,000, ab181602; Abcam) was used as a loading control. Proteins were visualized using Immobilon Western Chemiluminescent HRP Substrate (Millipore). Chemiluminescence signal acquisition was performed using an X-ray film (Kodak).
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4

Western Blot Analysis of Cell Signaling

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Cell lysate was collected using RIPA lysis buffer. The cell protein mass of each lysate was determined by BCA Protein Assay Reagent (Pierce, IL). Proteins were separated using 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to membranes (0.22 μm, Sigma) and incubated with primary antibodies at 4°C overnight. The primary antibodies are as follows: antibodies against VEGFA (1/1000; ab1316, Abcam), TGFβ1 (1/1000; ab215715, Abcam), Angiopoietin-1 (1/20000; ab183701, Abcam), ZO-1 (1/1000; ab216880, Abcam), Occludin (1/1000; ab216327, Abcam), Claudin-5 (1/1000; ab131259, Abcam), G3BP2 (1/2000; ab86135, Abcam), p-p38 (1/1000; ab195049, Abcam), p38 (1/2000; ab170099, Abcam), p-p53 (1/2000; ab33889, Abcam), p53 (1/1000; ab26, Abcam), and GAPDH (1/500; ab8245, Abcam). Next, the membranes were incubated with HRP-conjugated secondary antibody IgG (1/2000; ab7090, Abcam) at room temperature for 2 h. GAPDH antibody served as a negative control. At last, the protein bands were visualized by an ECL Western Blotting Substrate Kit (ab65623, Abcam) and quantified by the ImageJ software.
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5

Protein Analysis of Grafted Veins

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Total protein was isolated from grafted veins. After electrophoresis and
electrotransfer, membranes were blocked with 5% skimmed milk and were
incubated at 4°C with primary antibodies overnight (with
anti-proliferating cell nuclear antigen (PCNA) monoclonal antibody
13110 Cell Signaling, 1:1000 dilution; anti-alpha-smooth muscle actin
(α-SMA) antibody ab134047, Abcam, 1:3000 dilution; anti-α-SMA
antibody, ab7817, 1:3000 dilution; anti-p38 antibody, ab170099, Abcam,
1:3000 dilution; anti-phosphorylated p38-antibody, 4511, Cell
Signaling, 1:1000 dilution). After being incubated with a secondary
antibody, the bands were processed by Odyssey v1.2 software (Li-COR
Biosciences, Lincoln, NE, China). Gray values were measured based on
the internal reference of glyceraldehyde-3-phosphate dehydrogenase 2
(GAPDH-2).
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6

Molecular Mechanisms of Neurodegeneration

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After the behavioral test, five mice randomly selected from each group were deeply anesthetized with 4% pentobarbital and then received a transcardiac perfusion of ice-cold sterilized saline (20 ml per mouse). The brain was taken out behind the ear, and then the hippocampus tissue was stripped and put into liquid nitrogen immediately, and finally preserved in the refrigerator at -80°C for use. After extracted and quantified, the supernatant of protein was denatured by boiling for 5 min in SDS sample buffer. 40 μg of total protein was separated by 6%–15% SDS-PAGE, blotted onto PVDF membranes, and then probed with the following antibodies: monoclonal amyloid-β antibody (sc-28365, Santa Cruz Biotech), monoclonal anti-Phospho-p38 MAPK antibody (#9216, Cell Signaling Technology), rabbit anti-Tau (phospho, S262) antibody (ab64193, Abcam), rabbit anti-Synaptophysin antibody (ab14692, Abcam), rabbit anti-p38 antibody (ab170099, Abcam), mouse anti-Tau antibody (ab80579, Abcam), and mouse anti-GAPDH antibody (BM3876, Bosterbio), conjugated to horseradish peroxidase were used as secondary antibodies. Protein bands were visualized by incubation with BeyoECL Plus (P0018, Beyotime, China) for 1 min and imaged by a Gel Image System (Tanon, 5200, China). Densitometry was performed by using ImageJ software.
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7

Lung Tissue Protein Analysis

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Lung tissues (50 mg per mouse) were homogenized in ice‐cold RIPA buffer (Sigma‐Aldrich) with a 1% protease inhibitor cocktail and a phosphatase inhibitor, and protein concentration was examined using a BCA Protein Assay Kit (Beyotime, Shanghai, China). Thereafter, proteins (40 μg) were separated by 10% SDS‐PAGE and blotted onto a PVDF membrane. After blocking with 5% skimmed milk for 2 h, the membrane was incubated overnight with primary antibodies against p‐JAK2 (ab32101, 1:4000; Abcam), JAK2 (ab108596, 1:5000; Abcam), phosphorylated STAT3 (ab76315, 1:5000; Abcam), STAT3 (ab68153, 1:2000; Abcam), SOCS3 (ab280884, 1:1000; Abcam), p‐NF‐κB p65 (ab76302, 1:1000; Abcam), NF‐κB p65 (ab32536, 1:1000; Abcam), p‐p38 MAPK (ab195049, 1:1000; Abcam), p38 MAPK (ab170099, 1:1000; Abcam), and GAPDH (ab9485, 1:2500; Abcam) at 4°C, and subsequently incubated with secondary antibodies for 2 h at room temperature. The bands were visualized by enhanced chemiluminescence reagent (Beyotime), and the intensity of blot was quantified by Image Lab 3.0 software (Bio‐Rad, Hercules, CA, USA).
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8

Penile Tissue Protein Extraction and Analysis

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Total protein samples were extracted from penile tissues. The penile tissues were homogenized by precooled tissue lysates and centrifuged at 12,000 rpm for 15 min at 4°C, and the supernatants were obtained. Protein concentrations were determined using a BCA protein assay kit (Solarbio, Beijing, China). Protein lysate of equal concentration was loaded on 10% sodium dodecyl sulfate/polyacrylamide gel electrophoresis (SDS-PAGE) at 80 V for 30 min and 120 V for 60 min, and then electrotransferred to a polyvinylidene difluoride membrane (Bio-Rad, CA, U.S.A.). The membrane was blocked for 1 h at room temperature with 5% skimmed milk powder. Then, membranes were incubated with primary antibodies against CaSR (1:1000; ab18200, Abcam), PLC (1:5000; ab76155, Abcam), PKCδ (1:5000; ab182126, Abcam), JNK (1:2000; ab208035, Abcam), p38 (1:1000, ab170099, Abcam), Bax (1:2000, ab32503, Abcam), GAPDH (1:5000, 60004-1-1g, HuaBio, Hangzhou, China) at 4°C overnight, followed the membranes were washed and incubated with the appropriate horseradish peroxidase-conjugated secondary antibodies at room temperature for 1 h. Finally, the protein bands were visualized using an enhanced chemiluminescence detection system (Clinx Science Instruments, U.S.A.).
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9

Protein Expression Analysis of hADSCs

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After 14 days of osteoinduction or normal culture, the proteins of hADSCs were extracted by using RIPA buffer containing 1% PMSF (Sigma-Aldrich). The BCATM Protein Assay Kit (Pierce, Appleton, WI, USA) was used for quantification of protein samples. Equal amounts of protein samples (30 μg) were separated on 12% SDS-PAGE gels and transferred to PVDF membranes (Millipore Corporation, Billerica, MA, USA). After blocking in 0.5% bovine serum albumin (BSA; Roche) for 1 h at 37°C, the blocked membranes were incubated with the corresponding primary antibodies overnight at 4°C, including FOXC1 (ab223850, 1:1000), ALP (ab16695, 1:1000), RUNX2 (ab23981, 1 μg/ml), OCN (ab93876, 1 μg/ml), P38 (ab170099, 1:1000), p-P38 (ab4822, 1:500), AKT (ab179463, 1:1000), p-AKT (ab38449, 1:500) and GAPDH (ab181602, 1:1000), which were purchased from Abcam (Cambridge, MA, USA). The membranes were then washed and incubated with appropriate HRP-secondary antibodies (ab6721, 1:2000) (Cambridge, MA, USA) for 1 h at 37°C. The signals were detected and analysed by an enhanced chemiluminescence system (Amersham Biosciences, Piscataway, NJ, USA) and Image Lab software (Bio-Rad, Cal, USA). Protein levels were quantified using Image Lab software.
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10

Chondrogenic Cell Line ATDC5 Protein Expression

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The chondrogenic cell line ATDC5 was resuspended in Dulbecco's Modified Eagle Medium (DMEM) culture antibody, 44-684G, 1:1000; Invitrogen), p38 (rabbit anti-p38 antibody, ab170099, 1:3,000; Abcam), p-JNK (rabbit anti-p-JNK antibody, ab76572, 1:5000; Abcam), JNK (rabbit anti-JNK antibody, ab199380, 1:2500; Abcam), β-actin (rabbit anti-β-actin antibody, ab8227, 1:3000; Abcam). The membranes were further incubated with horseradish peroxidase (HRP)-conjugated goat anti-rabbit immunoglobulin G (IgG) secondary antibody (ab205718, 1:1500; Abcam) and the bands on the membranes were visualized by the ECL chemiluminescence reagent (Beyotime). The β-actin was used to normalize the amount of analyzed samples, and protein bands were quantified by gray scale analysis through ImageJ software (National Institutes of Health).
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