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1 217 protocols using 32 channel head coil

1

High-Resolution MRI Acquisition for Pediatric Neuroscience

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Whole-head, high-resolution T1-weighted structural images were collected using one of two custom 32-channel head coils made for children112 (link), a 12-channel coil, or the standard Siemens 32-channel head coil in 176 interleaved sagittal slices (TR = 2,530 ms, TE= 1.64/3.5 ms/5.36 ms/7.22 ms, resolution = 1 mm isotropic). Whole-brain functional BOLD data were collected in 32 near-axial slices (3 mm thick) in an interleaved order with a 20% distance factor (TR = 2,000 ms, TE = 30 ms, flip angle = 90°, bandwidth = 2298 Hz/Px, custom pediatric coils: FoV = 192 mm; standard 32-channel head coil: FOV = 256 mm; 12-channel head coil: FOV = unavailable, phase encoding A>P direction, matrix size = 64x64, in-plane resolution = 3 mm × 3 mm). PACE was used to adjust the position of the gradients based on the participant’s motion one TR back111 (link).
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Whole-Brain 3T MRI Structural Imaging

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Whole-brain MRI was performed using a 3 T Verio scanner equipped with a 32-channel head-coil (Siemens, Erlangen, Germany). Whole-brain MRI was performed using a 3 T Verio scanner equipped with a 32-channel head-coil (Siemens, Erlangen, Germany). Image pre-processing was performed with statistical parametric mapping (SPM) software (version: SPM8 revision 4667; Wellcome Department for Neuroimaging, University College London). Structural T1-weighted images were acquired using a Magnetization Prepared Rapid Acquisition Gradient Echo (MPRAGE) sequence (TR 1900  ms, TE 2.32 ms, flip angle 9°). The field of view (FOV) covered the whole brain (FOV 230 × 230 × 230 mm) with a slice thickness of 0.9 mm. The T1 images were segmented into grey and white matter and cerebrospinal fluid compartments.
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Multimodal MRI Acquisition of Resting-State Brain

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Imaging data were gathered at the Department of Radiology, Yeouido St. Mary’s Hospital, The Catholic University of Korea, using a 3T Siemens Skyra scanner and a 32-channel Siemens head coil (Siemens Medical Solutions, Erlangen, Germany). The T1-weighted volumetric magnetization-prepared rapid gradient echo scan sequences used the following parameters: TE = 2.6 ms, TR = 1940 ms, inversion time = 979 ms, FOV = 230 mm, matrix = 256 × 256, and voxel size = 1.0 × 1.0 × 1.0 mm3. A multiband gradient-echo EPI acquisition method was adopted for resting-state functional image acquisition, with TE = 86.0 ms, TR = 3100 ms, slice acceleration factor = 3, slice thickness = 2 mm, FOV = 224 mm, matrix = 128 × 128 × 29, and voxel size = 1 × 1 × 2 mm3. A total of 150 volumes were collected over a period of 5 min while the participant was instructed to “keep your eyes closed and think of nothing in particular”.
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3T MRI Volumetric Imaging Protocol

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Imaging data were collected by the Yeouido Saint Mary’s Hospital Department of Radiology at The Catholic University of Korea using a 3T Siemens Skyra MRI machine and a 32-channel Siemens head coil (Siemens Medical Solutions, Erlangen, Germany). The parameters used for the T1-weighted volumetric magnetization-prepared rapid gradient echo scan sequences were TE = 2.6 ms, TR = 1,940 ms, inversion time = 979 ms, FOV = 230 mm, matrix = 256×256, and voxel size = 1.0×1.0×1.0 mm3.
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Functional Brain Imaging Protocol

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The study was conducted at the NYU Center for Brain Imaging using a 3T Siemens Allegra scanner and a 32 channel Siemens head coil. Functional scans used a gradient echo sequence, TR = 2 s, TE = 20, flip ANGLE = 90, 183 FOV = 192, 3 mm slice thickness. A total of 39 axial slices were sampled for whole brain coverage. The in-plane resolution was 3 mm x 3 mm. Functional image acquisition was divided into four runs, one for each session, however the run for phase 3, reinstatement was not analyzed due to it short duration (approximately 1 minute). Between runs there was a break of approximately 15–30 s where the experimenter checked with the participant to make sure they were comfortable and alert. The scanning session ended with MPRAGE anatomical scans to obtain a 3D volume for slice selection.
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High-Resolution Brain Imaging with MRI

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MRI measurements were performed with a 3 Tesla TIM-TRIO system (Siemens Healthcare, Erlangen, Germany) using a 32 channel Siemens head coil. Functional images were acquired using a 2D single shot echo planar imaging sequence (repetition time = 2500 ms, echo time = 28 ms, flip angle = 90°, in-plane acceleration = GRAPPA 2) with 34 axial slices covering the whole brain (field of view = 230 mm, voxel size = 1.8 × 1.8 × 3.0 mm, no gap). Each of the 10 functional runs consisted of 56 volumes and lasted 140 s. A T1-weighted structural image was acquired using a magnetization-prepared rapid acquisition gradient-echo (MPRAGE) sequence (repetition time = 2300 ms, echo time = 3.36 ms, inversion time = 900 ms, flip angle = 9°, voxel size = 0.9 mm isotropic). To minimize head motion artefacts, individually constructed plaster cast helmets were used (Edward et al., 2000 ).
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Brain Imaging with 3T MRI Scanner

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Images were acquired with a 3 Tesla TIM-TRIO system (Siemens Healthcare, Erlangen, Germany) using a 32 channel Siemens head coil. 34 slices were aligned with the AC-PC plane, covering the whole brain (slice-thickness 3 mm, matrix 128*128, FOV 230*230 mm, voxel size 1.8*1.8*3.0 mm). To minimize head motion artefacts, individually constructed plaster cast helmets were used (Edward et al. 2000 (link)). A 2D single shot EPI-sequence was used with TE 35 ms, TR 2500 ms, parallel imaging with GRAPPA (IPAD = 2). Each of the 10 fMRI runs consisted of 56 volumes and lasted 140 s (preceded by 10 s of dummy scans).
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8

Multimodal MRI Protocols for Brain Research

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All task MRI data and all in-lab resting-state MRI data were acquired using a 32-channel Siemens head coil in a horizontal bore 3 Tesla Siemens Tim Trio located at the Harvard University Center for Brain Science in Cambridge, MA. Gradient echo EPI sequences were used for all tasks (TR = 2600 ms, TE = 30 ms, Flip angle = 90°, voxel size = 3.0 × 3.0 × 3.1 mm, 42 slices, whole brain coverage). Magnetization Prepared Rapid Gradient Echo (MP-RaGE) T1-weighted high-resolution data (TR = 6.6 ms, TE = 2.9 ms, Flip angle = 8°, voxel size = 1.0 × 1.0 × 1.3 mm) were acquired for each participant on the same scanner as the task data. In-lab resting-state data consisted of two runs of 6 min each (278 timepoints). The Human Connectome Project (HCP) resting-state data consisted of four runs of fifteen minutes of resting state data per subject. The runs were normalized across time and concatenated to give us sixty minutes of resting state data per subject.
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9

Multimodal Neuroimaging Protocol for Resting-State fMRI

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Imaging data were collected at the Department of Radiology, Yeouido St. Mary’s Hospital, The Catholic University of Korea, using a 3 T Siemens Skyra machine and 32 channel Siemens head coil (Siemens Medical Solutions, Erlangen, Germany). The parameters used for the T1-weighted volumetric magnetization-prepared rapid gradient echo scan sequences were TE = 2.6 ms, TR = 1,940 ms, inversion time = 979 ms, FOV = 230 mm, matrix = 256×256, and voxel size = 1.0×1.0×1.0 mm3. Resting state functional images were collected using a multiband gradient-echo EPI acquisition, with TE = 86.0 ms, TR = 3,100 ms, slice acceleration factor = 3, slice thickness = 2 mm, FOV = 224 mm, matrix = 128×128×29, and voxel size = 1×1×2 mm3. 150 volumes were acquired over 5 min with the instruction “keep your eyes closed and think of nothing in particular”.
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10

Neuroimaging with 3T Siemens Trio Scanner

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The study was conducted at the Wellcome Trust Center for Neuroimaging at University College London using a 3-T Siemens Trio scanner equipped with a 32-channel Siemens head coil.
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