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11 protocols using progres c10plus

1

Epifluorescence Microscopy Imaging Protocol

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Specimens were imaged using an epifluorescence microscope (DM4000; Leica) equipped with DAPI, Endow GFP, and Texas red zero-pixel shift filter sets (Chroma Technology Corp.), a 63× 1.32 NA oil immersion objective, and a camera (CoolSNAP HQ; Roper Industries) controlled by MetaMorph 7. Z stacks were collected at 0.2 μm intervals and deconvolved using AutoDeblur (version X1; Media Cybernetics) for 10 iterations. Line scans (100 pixels wide) were performed using MetaMorph 7. For formalin-fixed, paraffin-embedded specimens stained as part of tissues microarrays, tiled images were collected on a DM4000 microscope equipped with Chroma filter sets (as above), a 20× HC PLAN APO NA 0.7 objective, CoolSNAP HQ2 grayscale CCD (for fluorescence) and Jenoptik ProgRes C10 Plus color CCD (for transmitted light) cameras, and a motorized xyz-stage (Ludl) controlled with custom MetaMorph 7 journals. Images were stitched using MetaMorph 7. Single images of H&E-stained slides were acquired using a MicroPublisher 5.0 CCD camera (Q Imaging) on a Leica DMLB microscope equipped with 10× NA0.25 and 40× NA0.65 HC FL PLAN objectives.
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2

Quantifying oxLDL Uptake in Cancer Cells

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The amount of oxLDL internalization in cancer cells was evaluated by Oil Red staining. HNCC were plated on sterile round glass coverslips in a 12-wells dish at 60,000 cells/well during 24 h. For 93VU-147T cells, the medium was replaced by fresh medium with 30 µg/mL reference oxLDL, or 30 µg/mL home-made oxLDL, or fresh medium alone, for 48 h. For UM-SCC47 and UPCI-SCC154 cells, the medium was replaced by fresh medium with 30 µg/mL home-made oxLDL or fresh medium alone. The medium used was prepared with 10% Charcoal Stripped FBS (Labconsult SA-NV, Brussels, Belgium), which is delipidated with active carbon, instead of standard, decomplemented FBS. Cells were fixed with 4% paraformaldehyde in Dulbecco’s Phosphate-Buffer (DPBS, Lonza, Verviers, Belgium), then rinsed with DPBS and stained with Oil Red O (Merk Sigma, Darmstadt, Germany) for 15 min at room temperature (RT). After three rinsing steps with distilled water, cells were mounted with Aquatex® (Merk Sigma, Darmstadt, Germany) and observed by phase-contrast microscopy using a Zeiss axioplan microscope equipped with a color charge-coupled device (CCD) camera (ProgRes C10plus, Jenoptik, Jena, Germany). Five fields were captured at ×10 magnification. Total cells and cells having accumulated lipids were counted using ImageJ (Research Services Branch of the National Institute of Health, NIH, Bethesda, MD, USA) [32 (link)].
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3

Epifluorescence Microscopy Imaging Protocol

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Specimens were imaged using an epifluorescence microscope (DM4000; Leica) equipped with DAPI, Endow GFP, and Texas red zero-pixel shift filter sets (Chroma Technology Corp.), a 63× 1.32 NA oil immersion objective, and a camera (CoolSNAP HQ; Roper Industries) controlled by MetaMorph 7. Z stacks were collected at 0.2 μm intervals and deconvolved using AutoDeblur (version X1; Media Cybernetics) for 10 iterations. Line scans (100 pixels wide) were performed using MetaMorph 7. For formalin-fixed, paraffin-embedded specimens stained as part of tissues microarrays, tiled images were collected on a DM4000 microscope equipped with Chroma filter sets (as above), a 20× HC PLAN APO NA 0.7 objective, CoolSNAP HQ2 grayscale CCD (for fluorescence) and Jenoptik ProgRes C10 Plus color CCD (for transmitted light) cameras, and a motorized xyz-stage (Ludl) controlled with custom MetaMorph 7 journals. Images were stitched using MetaMorph 7. Single images of H&E-stained slides were acquired using a MicroPublisher 5.0 CCD camera (Q Imaging) on a Leica DMLB microscope equipped with 10× NA0.25 and 40× NA0.65 HC FL PLAN objectives.
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4

Morphometric Analysis of Immunostained Tissues

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A morphological examination of immunostained tissue sections was carried out on a Zeiss Axioplan microscope equipped with a color change-couple device (CCD) camera (ProgRes C10plus, Jenoptik, Jena, Germany). Morphometric analysis was performed using KS 400 imaging software (Carl Zeiss Vision, Hallbergmoos, Germany), as described previously [13 (link)].
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5

Polarizing Light Microscopy for Thermal Analysis

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A polarizing light microscope (Nikon, Optiphot-2, Tokyo, Japan) equipped with a Linkam THMS 600 heating stage, a Linkam TP 91 control unit, and a Jenoptic ProgRes C10Plus camera with Jenoptik ProgRes CapturePro software was utilized for PLM observations. The samples were heated, melted, quenched, and captured during cold crystallization.
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6

Glycogen Detection in Pseudo-pregnant Uteri

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The pseudo-pregnant uteri (contains no conceptus/implantation sites; 7dpc) were collected and fixed in 4% formalin and paraffin embedded. For histology 3-5 µm thick sections were cut and stained with haematoxylin and eosin (H&E). The PAS stain allows the detection of polysaccharides such as glycogen. Tissue sections were deparaffinized and hydrated. Sections were then immersed in periodic acid solution (#11415, Morphisto, Frankfurt am Main, Germany) for 12 minutes at room temperature (RT), and then rinsed twice in distilled water. Slides were then immersed in Schiff’s reagent (#1.09033, Merck, Darmstadt, Germany) for 15 minutes at RT, followed by 10 min in running tap water. Finally, a counterstain with Hematoxylin solution was performed (4 minute incubation in Mayers Hematoxylin, 10 minutes washing in running tap water, dehydration and section mounting). The presence of glycogen with the Schiffs’ reagent gives a purple-magenta colour and hematoxylin staining gives the nuclei a blue colour. Images were taken using a digital camera ProgRes C10 plus (Jenoptik, Jena, Germany) mounted on an Zeiss Axio Imager 1 microscope (Zeiss, Oberkochen, Germany), with the ImageAccess Enterprise 6 Software (Imagic Bildverarbeitung, Glattbrugg, Switzerland). Appropriate positive and negative controls were used to confirm the adequacy of the staining.
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7

Histological Analysis of Tumor Samples

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For histology, tumors were fixed in 4.5% formalin (SAV LP GmbH, Flintsbach am Inn, Germany) or zinc (IHC Zinc-Fixative, BD Biosciences, Franklin Lakes, USA) and embedded in paraffin (Paraplast® Embedding Media, McCormick Scientific, Leica Microsystems, Wetzlar, Germany). Formalin-fixed sections were cut at 4 μm, deparaffinized and stained with either H&E or with the respective antibodies for immunohistochemistry. Slides were stained using an automatic immunostainer (Discovery XT, Ventana Medical Systems, Inc., Tucson, USA) according to the manufacturer’s standard protocols with antibodies against CD31 (Abcam Inc., Cambridge, USA), β3-Integrin (Abcam Inc.), glucose transporter 1 (GLUT1, Abcam Inc.) and Ki67 (ThermoFisher Scientific, Waltham, USA). Images were acquired under a microscope (Axio Imager A1, Carl Zeiss AG, Oberkochen, Germany) using a coupled digital camera (ProgRes® C10plus, JenOptik, Jena, Germany) and the software ImageAccess (Version 6, Imagic Bildverarbeitungs AG, Glattbrugg, Switzerland) or extracted from digitized whole slide imaging (Nanozoomer, Hamamatsu) using the corresponding software.
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8

Histological Preparation of Sponge Species

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Samples were fixed immediately in a solution of 5% formaldehyde in seawater. Prior to the histological procedures, the samples of P. tenacior, which contained siliceous spicules, were desilicified for 2 h in a solution of 5% hydrofluoric acid, while D. avara samples were decalcified for 2 h in a 5% solution of ethylene-diamine-tetracetic acid (EDTA) (Eerkes-Medrano & Leys, 2006 (link)) to remove the calcareous material included in its protein-made skeletal fibers (Galera et al., 2000 (link)).
Samples of both species were subsequently rinsed in distilled water, dehydrated through a graded ethanol series (70%, 96%, and absolute), rinsed in toluene/ethanol (1/1), and then in pure toluene, and embedded in paraffin for histological examination. Histological sections, 5 µm-thick, were obtained using an Autocut Reichert-Jung microtome 2040 (R. Jung GmbH, Nubloch, Germany). Sections were deparaffined with xylene, stained with hematoxylin and examined through a Zeiss Axioplan II compound microscope connected to a digital camera (Prog Res™ C 10plus from JENOPTIK). Four sections were cut from each individual sponge, separated at intervals of ca. 1 mm to avoid cutting more than once the same reproductive structures.
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9

Leaf Silhouette Imaging Techniques

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Leaf silhouettes were prepared by sticking detached leaves on to a sheet of paper and scanning them using a Perfection V500 Photo scanner (Epson). For the developmental series, L6 leaves were dissected from the meristem under a stereomicroscope, mounted in water between a slide and coverslip, and imaged using an Axio Zoom.V16 microscope (Carl Zeiss Microscopy, Jena, Germany; http://www.zeiss.com/). For leaf shape analysis of in vitro grown plants, L5 leaves were collected, mounted in water between a slide and coverslip, and imaged using a stereomicroscope (SMZ 1000, Nikon) coupled to a camera (ProgResC10plus, Jenoptik).
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10

Lipid Accumulation in HNC Cells

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Human HNC cell lines were plated at a density of 30,000 cells/mL on sterile round glass coverslips in a 12-well dish. The following day, the medium was replaced with a fresh serum-free medium, with or without 30 µg oxLDL. After 48 h of exposure, cell monolayers were fixed with 4% paraformaldehyde in Dulbecco’s Phosphate-Buffered Saline (DPBS, Lonza, Verviers, Belgium). Cells were rinsed with DPBS and colored with Oil Red O (Merk Sigma, Darmstadt, Germany) for 15 min at room temperature. Cells were rinsed three times with distilled water and the slides were mounted with aquatex® (Merk Sigma, Darmstadt, Germany). The appearance of cells, with or without oxLDL, was documented by phase-contrast microscopy using a Zeiss axioplan microscope equipped with a color charge-coupled device (CCD) camera (ProgRes C10plus, Jenoptik, Jena, Germany).
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