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Sybr green reaction mix

Manufactured by Takara Bio
Sourced in Japan, China, United States

SYBR Green reaction mix is a ready-to-use solution containing SYBR Green I dye, DNA polymerase, dNTPs, and other necessary components for real-time PCR amplification and detection. It is designed to facilitate quantitative gene expression analysis and DNA quantification.

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20 protocols using sybr green reaction mix

1

RNA Extraction and qPCR Analysis

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RNA was extracted from cells and tissues using TRIzol (Gene Copoeia, MD, USA), and 1 µg total RNA from each sample was reverse transcribed to cDNA using specific primers and SYBR Green reaction mix (Takara Biotech). Real-time qPCR was performed on the Bio-Rad Real-Time PCR cycler. Relative gene expression levels were calculated by the 2-ΔΔct method. The primer sequences were as follows: SCAMP5 forward: GCCCCATCAAGGTTCAGGAC, reverse: TACGTGTAATTGGGGGTGGC; GAPDH forward: TGGTATCGTGGAAGGACTC, reverse: AGTAGAGGCAGGGATGATG.
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2

Quantitative RT-PCR Analysis of Liver Transcripts

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TRIzol reagent (Invitrogen, Carlsbad, CA, USA) was administrated to extract total RNA from frozen liver tissues and cells. One μg RNA was reverse-transcripted into cDNA using AMV retrotranscriptase system (TakaRa, Dalian, Liaoning, China). qPCR reactions in triplicate were run in ABI StepOne Plus System (Applied Biosystems, Foster City, CA, USA) using SYBR Green reaction mix (TakaRa). In a final reaction volume of 20 μl, the following were added: 1× SYBR Green (TakaRa, Dalian, Liaoning, China), cDNA, 0.5 mM each primer, and ROX. The reaction conditions were as follows: 95 °C (10 min) followed by 40 cycles of 95 °C (15 s) and 60 °C (1 min). The primers were designed by Primer version 3.0 and listed in Supplementary Table 1. Relative expression of gene transcripts was calculated and normalized to the expression of the reference gene GAPDH.
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3

Quantifying Antioxidant Enzyme mRNA Expression

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Total cellular RNA was extracted using TRIzol reagent (Thermo Fisher Scientific, Inc.). RNA was then reverse transcribed to cDNA in a total volume of 20 µl using a Moloney-Murine Leukemia Virus Reverse Transcriptase kit (Promega Corporation, Madison, WI, USA). The mRNA levels of antioxidant proteins, including superoxide dismutase 1 (SOD-1), superoxide dismutase 2 (SOD-2), glutathione peroxidase 1 (Gpx-1), glutathione peroxidase 4 (Gpx-4), and catalase (CAT), were analyzed by RT-qPCR using specific primers, according to a previous report (15 (link)). The qPCR reaction was carried out using a commercial SYBR-Green reaction mix (Takara Bio, Inc., Otsu, Japan). Thermal cycling was performed in an ABI 5700 sequence detection system (Applied Biosystems; Thermo Fisher Scientific, Inc.). Reaction conditions were as follows: 95°C for 30 sec, followed by 40 cycles of 95°C for 5 sec and 60°C for 31 sec. mRNA expression levels were quantified using the 2∆∆Cq method as described previously (16 (link)). β-actin was used as internal control for each sample.
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4

Quantitative Real-Time PCR for Telomere Length

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The method measuring telomere length with real-time PCR was reported previously (Peng et al., 2011 (link)). Genomic DNA was extracted on the basis of the manufacturer's instrctions (Aidlab, Beijing, China). Quantitative RT-PCR was conducted using SYBR Green Reaction Mix (TaKaRa, Dalian, China) according to the manufacturer's instructions on an ABI PRISM 7900 HT Detection System (Applied Biosystems, Carlsbad, CA, USA). The primers were as follow (Peng et al., 2011 (link)): Telomere forward primer 5′-GGTTTTTGAGGGTGAGGGTGAGGGTGAGGGTGAGGGT-3′, reverse primer 5′-TCCCGACTATCCCTATCCCTATCCCTATCCCTATCCCTA-3′. The reference gene 36B4: forward primer 5′-CTCACTCCATCATCAATGGATACAA-3′, reverse primer 5′-CAGCCAGTGGGAAGGTGTAGTCA-3′. PCR conditions were 95°C for 30 s followed by 40 cycles of 95°C for 5 s and 56°C for 31 s (Peng et al., 2011 (link)). The single-copy gene 36B4 was used as a control and the target gene expression was calculated using the ΔΔCt comparative method.
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5

Quantification of Estrogen Receptor Expression in Human and Rat Tissues

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Total RNA was extracted from human PRLoma tissues and xenograft tumours using Trizol Reagent (Invitrogen, Carlsbad, CA, USA), according to the product manual. We reverse‐transcribed 2 μg RNA from each sample by extension of oligo primers (TaKaRa) using M‐MLV reverse transcriptase (New England Biolabs) following the manufacturer's protocol. Real‐time PCR was performed on a Bio‐Rad IQ5 cycler using a SYBR Green reaction mix (Takara). Primers are listed below. Relative expression levels were standardised to GAPDH as internal control for all real‐time PCR assays.
Hum‐ERα Forward Primer: TCTGTCTCCTGCATACACTC
Reverse Primer: GGGAATCCTCACGCTTAG
Hum‐ERβ Forward Primer: GCTTTGGTTTGGGTGATTG
Reverse Primer: CCGAGTTGATTAGAGGGTC
Hum‐GAPDH Forward Primer: TGTGGGCATCAATGGATTTGG
Reverse Primer: ACACCATGTATTCCGGGTCAAT
Rat‐ERα Forward Primer:GCTCCTAACTTGCTCTTGG
Reverse Primer:GGACTCGGTGGATGTGGT
Rat‐ERβ Forward Primer:TCTCCTTTAGCGACCCA
Reverse Primer:ACGCCGTAATGATACCC
Rat‐GAPDH Forward Primer:TTCTTGTGCAGTGCCAGCCTCGTC
Reverse Primer:TAGGAACACGGAAGGCCATGCCAG
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6

Quantitative Analysis of Gene Expression

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Total RNA was extracted from the CMs using Trizol reagent (Invitrogen, CA, USA) according to manufacturer instructions. The cDNA was synthesized from 2 μg of RNA using Moloney Murine Leukemia Virus (M-MLV) reverse transcriptase and an oligo dT 18 primer (TAKARA, Japan). Quantitative real-time polymerase chain reaction (PCR) was performed using the SYBR Green Reaction Mix (TAKARA, Japan) following manufacturer instructions. The PCR conditions were 95°C for 10 min and 40 cycles of 95°C for 30 s, 60°C for 30 s and 72°C for 1 min. The PCR primers were designed using Primer3 Input online software, and they are listed in Table 1. Beta-actin was used as a control, and the relative expression of the target genes was evaluated by a comparative cycle threshold method and normalized to the control. The data are presented as the mean ± SD.
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7

RNA Extraction and RT-qPCR Analysis

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TRIzol reagent (Invitrogen, USA) was used to extract the total RNA from cultured cells. 1-5ug of the total RNA was used for cDNA synthesis using the PrimeScript RT Reagent Kit (Takara, Japan). SYBR Green reaction mix (Takara, Japan) was used to perform the RT-qPCR assay with CFX96 Touch Real-Time PCR Detection System (Bio-Rad, USA). The primers are listed in Supplementary Table S2.
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8

Total RNA Extraction and RT-qPCR Analysis

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Total RNA was extracted using the Trizol reagent (Life Technologies, Carlsbad, CA, USA) and first strand complementary DNA (cDNA) generated by the Reverse Transcription System (Takara) in a 20-µL reaction containing 2 µg total RNA, according to the manufacturer’s protocol. Real-time PCR was performed on a Roche LightCycler 480 using a SYBR Green reaction mix (Takara). Values are shown means and standard deviations (SD) of the results from at least three independent experiments. All primer sets are available upon request.
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9

Quantitative Real-Time PCR Analysis of Gene Expression

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Total RNA was extracted from the CMs using TRIzol reagent (Invitrogen) according to the manufacturer's instructions. cDNA was synthesized from 2 µg of RNA using Moloney murine leukaemia virus (M-MLV) reverse transcriptase and an oligo(dT)18 primer (Takara, Otsu, Japan). Quantitative PCR (qPCR) was performed using the SYBR-Green Reaction Mix (Takara) following the manufacturer's instructions. The PCR conditions were 95°C for 10 min and 40 cycles of 95°C for 30 sec, 60°C for 30 sec and 40 cycles of 72°C for 1 min. The PCR primers were designed using Primer3 Input online software and are listed in Table I. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as a control, and the relative expression of the target genes were evaluated by a comparative CT method and normalised to the control.
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10

Quantitative Gene Expression Analysis

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Total RNA was extracted from cultured cells using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). Then, 1 μg RNA was reverse transcribed into cDNA using the AMV retrotranscriptase system (TaKaRa, Dalian, Liaoning, China). qPCR reactions were run in triplicate on an ABI StepOne Plus System (Thermo Fisher Scientific) using SYBR Green reaction mix (TaKaRa, Dalian, Liaoning, China). The primers were designed by Primer Version 0.4.0 and listed in Supplementary Table 1. The relative expression of the target gene was calculated and normalized to the expression of the reference gene Gapdh.
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