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5 protocols using anti cd16 pe

1

Quantifying NK Cell Activation

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High-binding ELISA microplates were precoated with GNL prior to the immobilization of 5 μg/mL GPC-I53-dn5B, incubated at 4°C overnight, washed with 1X Tris-Buffered Saline, and blocked with 1% BSA in PBS. PBMC were obtained from leukapheresis products of healthy donors by Ficoll-Paque density gradient following the manufacturer’s protocol. NK cells were enriched by positive selection from human PBMCs using Miltenyi’s CD56 MicroBeads following manufacturer’s protocol and stimulated with 10 ng/mL IL-15 in Iscove's Modified Dulbecco's Medium supplemented with 10% FCS and 100 U/mL penicillin/streptomycin. Stimulated NK cells were incubated at 37°C overnight. On the day of the experiment, a 1:50 dilution of guinea pig serum in 1% BSA in PBS was added onto the well and incubated for 1 h at 37°C. NK cells were added onto the plate at 35,000 cells per well and incubated for 3 h at 37°C. After incubation, NK cells were transferred into a 96 well V-bottom microplate and stained with anti-CD16-PE (Biolegend) at a 1:1000 dilution (CD16 is a marker for NK cell activation62 (link)). As a positive control, phorbol myristate acetate (PMA) (50 ng/mL) and ionomycin (500 ng/mL) was added, and no serum wells was used as a negative control. Samples were read using a BD FACSymphony A1 Cell Analyzer.
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2

Comprehensive Immunophenotyping of SARS-CoV-2 Infection

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Samples of EDTA anticoagulated peripheral blood (6 mL) were collected from control or SARS-CoV-2–infected CMs. Then, diverse cell populations were measured by flow cytometry according to the manufacturer’s instructions with the following monoclonal antibodies: anti-CD3-PE-Cy7 (BD Biosciences, 557917), anti-CD4-APC (Biolegend, 317415), anti-CD8-PE (Biolegend, 301008), anti-CD20-PE (Biolegend, 302306), anti-CD16-PE (Biolegend, 302007), and anti-CD56-APC (Biolegend, 318309). Samples were analyzed on a BD FACS Canto II flow cytometry system (BD Biosciences). For blood routine analysis, anticoagulant venous blood collected at indicated time points were subjected to five classification hematologic analyzer (Mindray, China).
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Detailed Multiparametric Immunophenotyping Protocol

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For flow cytometry, we used anti-CD3 FITC (BioLegend, USA, Cat#300440) and PerCP (BD Biosciences, USA, Cat#347344), anti-CD56 FITC (BioLegend, USA, Cat#318304) and APC (BD Biosciences, USA, Cat#555518), anti-CD16 PE (BioLegend, USA, Cat#302008); for staining memory cells anti-KLRG1 FITC (BioLegend, USA, Cat#138410), anti-CD27 PE (BD Biosciences, USA, Cat#555441); for intracellular staining anti-IL-32α (R&D Systems, USA, Cat#IC30402A) and anti-IFN-γ APC (BioLegend, USA, Cat#502512) antibodies were used. Magnetic beads conjugated to anti -CD56 (Miltenyi Biotec, Germany, Cat# 120-000-307) and -CD14 antibodies (Miltenyi Biotec, Germany, Cat# 120-000-305) were used for positive selection of NK cells and monocytes respectively.
For in vitro stimulation assays, we used ESAT-6 (BEI Resources, USA, Cat#NR-50711) and CFP-10 (BEI Resources, USA, Cat#NR-50712) peptide pools consisting of 21 and 22 individual peptides belonging to 6-kDa ESAT-6 and 10-kDa CFP-10 respectively. γ-irradiated Mtb H37Rv whole cells were used for some experiments (BEI resources, USA, Cat#49098).
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Multiparametric Flow Cytometry of Immune Cells

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Zombie UV™ Fixable Viability Kit, anti-CD45 BV570, anti-CD3 BV605, anti-CD4 BV421, anti-CD8 BV650, anti-CD4 APC-Fire750, anti-CD73 PE/Dazzle 594, anti-CD56 PE, anti-CD14 PerCP/Cy5.5, anti-CD16 Alex Fluor 700, anti-CD19 APC-Fire750, anti-HLA-DR PE-Cy5, anti-PD-1 BV421, anti-CD16 PE, anti-IFNγ A700, anti-IL-13 APC, anti-IL-5 APC, anti-TNFα Alexa Fluor 488, and anti-IL-21 PE were purchased from BioLegend (London, UK). Anti-CD25 BB515, anti-CD4 BUV496, anti-CD39 BV711, anti-Perforin Alexa Fluor 647, anti-Granzyme B Alexa Fluor 700, anti-Ki-67 Alexa Fluor 700, anti-CD45RA PE, anti-IL-2 PerCP/Cy5.5, and Fixation/Permeabilization Solution Kit were purchased from Becton Dickinson. Anti-FOXP3 APC, anti-CD56 APC-eFluor780, and eBioscience™ (San Diego, CA, USA) Foxp3/Transcription Factor Staining Buffer Set were purchased from eBioscience TermoFisher scientific. Anti-TIM-3 APC was purchased from R&D systems. Anti-CD137 PE and FcR blocking reagent were purchased from Miltenyi (Bergisch Gladbach, Germany).
Peptides for the PSA, PSMA, PSCA, and PAP pools (Supplementary Table S1) were synthetized and lyophilized by the Peptide and Tetramer Core Facility of the Department of Oncology at UNIL-CHUV (Lausanne, Switzerland), and 5T4 pools (Supplementary Tables S2 and S3) were synthetized and lyophilized by JPT Peptide Technologies.
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5

Multiparametric Immunofluorescence Imaging

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For immunohistochemistry staining, all primary antibodies were diluted 1:300 in PBS with 6 µM DAPI (Sigma-Aldrich) for nuclear detection. Antibodies used were anti-CD3 Alexa Fluor 647 (BioLegend, Clone UCHT1), anti-CD4 FITC (BioLegend, clone SK3), anti-CD8 PE (BD Biosciences, clone SK1), anti-CD19 FITC (BioLegend, clone SJ25C1), anti-CD56 PE (Beckman Coulter, clone N901), anti-CD16 PE (BioLegend, clone 3G8), anti-CD14 Alexa Fluor 647 (BioLegend, clone HCD14) and anti-CD20 PE (BD Biosciences, clone 2H7). Per well, 20 μl of the antibody cocktail was added and incubated for 1 h at room temperature. For imaging, a PerkinElmer Opera Phenix automated spinning-disk confocal microscope was used and each well of a 348-well plate was imaged at 20× magnification with 5 × 5 non-overlapping images, covering the whole well surface. The images were taken sequentially from the bright-field (650–760 nm), DAPI/nuclear signal (435–480 nm), GFP signal (500–550 nm), PE signal (570–630 nm) and APC signal (650–760 nm) channels. Raw .tiff files were exported for analysis.
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