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7 protocols using anti timp 1

1

Immunophenotyping Antibody Panel for Mice

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Cisplatin was purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-CD4 (RM4-5) APC/FITC/Pacific blue and anti-TCRβ (H57-597) FITC/BV421, CD45 (30-F11) APC-Cy7/BUV395, anti-CD8α (53 ± 6.7) PerCP-Cy5.5/APC-fire750, were purchased from BD Biosciences. Biotin-conjugated anti-CD16/32 (2.4G2) was purchased from BioLegend. Anti-AGTR2, anti-TIMP-1, and anti-KIM-1 antibodies were purchased from R&D systems (MN, USA). Anti-GAPDH and anti-Bcl-2 antibodies were from Santa Cruz Biotechnology, Inc. (CA, USA). Anti-calbindin antibody was purchased from Cell Signaling Technology, Inc. (MA, USA).
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2

Immunohistochemical Analysis of MMPs and TIMPs

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Immunohistochemistry was performed with a VECTASTAIN® ABC-PEROXIDASE Kit (Vector Labs, Burlingame, CA) according to the manufacturer’s instructions. The primary antibodies used for this assay were anti-MMP-1, -2, -3, -9, and -12, anti-TIMP-2 (all from Abcam), anti-MMP-13, and anti-TIMP-1 (both from R&D systems). The tissue sections were developed with a DAB Substrate Kit and then counterstained with VECTOR Hematoxylin QS (both from Vector Labs).
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3

Immunoblot Analysis of Cell Lysate Proteins

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Cell lysate preparation and immunoblot analyses were performed as previously reported [40 (link)]. Filters were probed with the indicated primary antibodies: anti-TIMP-1 and anti-CD99 (R&D Systems, Minneapolis, MN, USA); anti-integrin β1, anti-CD63 and anti-vinculin (Santa Cruz Biotechnology, Dallas, TX, USA); anti-vimentin, anti-integrin αv, anti-PDGFRβ, anti-pAKT, anti-pErk 1/2 and anti-ZO-1 (Cell Signaling Technology Inc., Danvers, MA, USA); anti-ITPRIPL1 (OriGene Technologies, Rockville, MD, USA); anti-NF-kB-p65 (Elabscience, Houston, TX, USA); anti-actin (Sigma-Aldrich); and anti-CD44 (Abcam, Cambridge, UK). Densitometric analysis was performed on at least two different exposures to assure the linearity of each acquisition using ImageJ software (v1.46r).
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4

Quantitative Analysis of Extracellular Matrix Proteins

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Proteins were extracted using RIPA buffer (Sigma) and protease inhibitor cocktail (Sigma), boiled in sample buffer (BioRad), and separated by SDS-PAGE using 6 % stacking gel and 12 % separating gel (cell sample: 50 μg/lane; medium sample: 20 μl/lane). PVDF (0.45 μm; Millipore, Billerica, MA, USA) blots were prepared and incubated at 4 °C overnight with the primary antibodies (1:1000; anti-MMP3, Abcam; anti-TIMP1, R&D; anti-GAPDH, Abcam), followed by enzyme-conjugated secondary antibodies (GE, Marlborough, MA, USA), and detection was carried out with the ECL Kit (Pierce, Thermo Fisher, Grand Island, NY, USA) and visualized using a FOTO/Analyst1 Fx CCD imaging system (Fotodyne, Hartland, WI, USA). Images were analyzed by NIH Image J 1.45s. Each blot was repeated at least in duplicate, and representative scans are presented.
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5

Comprehensive Antibody Panel for Muscle Tissue Analysis

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Primary antibodies used for immunoblotting and immunostaining: anti-annexin A6 (cat# ab199422; Abcam), anti-annexin A2 (cat# 610068; BD Bioscience), anti-caveolin 3 (cat# NBP128917; Novus Bio), anti-collagen type 1 (cat# CL50151AP1; Cedarlane), anti-decorin (cat# AF1060; R&D Systems), anti-dystrophin (cat# PA137587; Invitrogen), anti-HSP90 (cat#4874; Cell Signaling Technologies), anti-laminin-2 (α–2 Chain) (cat# L0663; MilliporeSigma), anti-MMP9 (cat# ab38898; Abcam), anti-myosin 4 (cat# PA550065; Invitrogen), anti-periostin/OSF-2 (cat# NBP130042; Novus Bio), anti-Mo CD140a (PDGRFα) (cat# 17140181; Invitrogen), anti-TGF Beta 1 (cat# 218981AP; Proteintech and cat# MA515065; Invitrogen), anti-Thrombospondin-4 (cat# AF2390; R&D Systems), and anti-TIMP-1 (cat# AF980; R&D Systems). Secondary antibodies used: Alexa Fluor 488 goat anti-rat (cat# A11006; Invitrogen), Alexa Fluor 594 goat anti-rabbit (cat# A11012; Invitrogen) and Alexa Fluor 594 donkey anti-goat (cat# A11058; Invitrogen).
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6

Transwell Migration Assay for BMSCs and CECs

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Cultured Nestin+ and Nestin BMSCs were seeded on the lower chamber of the 24-well plates, while Sca-1+ CECs were plated at 5 × 104 cells/well on the upper compartment of 24-well transwell inserts (8-mm pore size insert, Millipore, Billerica, MA, USA), and the plates were then incubated for 12 h at 37 °C under 5% CO2. In the control group, no cell was seeded on the lower chamber. After the incubation, the transwell inserts were discarded, and the upper side of the filter was gently swabbed to remove the non-migratory cells. Migrated cells on the lower side of the insert filter were then quickly fixed using 4% paraformaldehyde (PFA) and stained with 0.5% crystal violet for 20 min. Neutralization assays were performed in a transwell system supplemented with anti-TIMP-1 (1.5 μg/ml; R&D Systems), anti-TIMP-2 (3 μg/ml; R&D Systems), and anti-CXCL12 (100 μg/ml; R&D Systems). Microscopic examination was performed and five low-power fields (magnification, × 400) were randomly selected from each chamber. All the experiments in each group were performed in triplicate. The migrated cells were counted by two individuals in a blinded fashion.
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7

Matrigel Tube Formation Assay

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Matrigel Matrix (Corning) was thawed overnight at 4°C. The day of the assay, 100 µl of Matrigel were seeded in the 96-well plate and left to polymerize at 37°C, 5% CO2 for at least 30 minutes. 2x10 4 HUVEC were first suspended in 100 µl of hMSC-CM, supplemented with 10% FBS, alone or with anti-TIMP-1 (AF970 R&D) at the final concentration of 5 ug/mL, and then seeded on the solidified matrix. The formation of the tube networks develops in 4 hours at 37°C 10% CO2.
MEMalpha supplemented with 10% heat-inactivated FBS were used as positive control. At the end of the incubation, cell tubes were imaged with a phase contrast inverted microscope at 4× objective magnifications and analysis was performed with ImageJ Angiogenesis Analyzer.
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