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76 protocols using em 902

1

Electron Microscopy of Wing Discs

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Wing discs were fixed in 2.5% glutaraldehyde in 100 mM phosphate buffer washed in 100 mM phosphate buffer and postfixed in 2% osmium tetroxide in phosphate buffer for 1 h on ice. After contrasting en bloc in 2% uranyl acetate, the specimens were dehydrated in EtOH and embedded in araldite using acetone as an intermediate solvent. Thin sections were stained with 2% uranyl acetate and lead citrate. Sections were observed under a microscope (EM 902; Carl Zeiss) at 80 kV.
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2

Electron Microscopy Sample Preparation

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EHTs were fixed in a mixture of 4% paraformaldehyde and 1% glutaraldehyde (Science Services, Germany) in 0.1 M phosphate buffer overnight at 4°C. Samples were rinsed three times in 0.1 M sodium cacodylate buffer (pH 7.2–7.4) and osmicated using 1% osmium tetroxide in cacodylate buffer. Following osmication, the samples were dehydrated using ascending ethanol concentrations, followed by two rinses in propylene oxide. Infiltration of the embedding medium was performed by immersion in a 1:1 mixture of propylene oxide and Epon (Science Services, Germany), followed by neat Epon and hardening at 60°C for 48 h. For light microscopy, semi‐thin sections (0.5 µm) with longitudinal orientation were mounted on glass slides and stained for 1 min with 1% toluidine blue. For electron microscopy, ultra‐thin sections (60 nm) were cut and mounted on copper grids and stained using uranyl acetate and lead citrate. Sections were examined and photographed using an EM902 (Zeiss) electron microscope equipped with a TRS 2K digital camera (A. Tröndle, Moorenweis, Germany).
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Transmission Electron Microscopy Sample Preparation

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Tissues were fixed with 2% glutaraldehyde in 0.1 M Na cacodylate buffer pH 7.2, for 3 hours at room temperature. Samples were then postfixed with 1% osmium tetroxide containing 1.5% potassium cyanoferrate, gradually dehydrated in ethanol (30% to 100%) and embedded in Epon (Delta Microscopy, Labège, France).
Thin sections (70 nm) were collected onto 200 mesh cooper paladium grids, and counterstained with lead citrate before examination with a Zeiss EM 902 transmission electron microscope at 80 KV (MIMA2 - UR 1196 Génomique et Physiologie de la Lactation, INRA, plateau de Microscopie Electronique, 78352 Jouy-en-Josas, France). Microphotographies were acquired using MegaView III CCD camera and analysed with the ITEM software (Eloïse SARL, Roissy CDG, France).
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4

COS7 Cells Preparation for Electron Microscopy

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COS7 were prepared for electron microscopy, as previously described (Wakabayashi et al., 2009 (link)). In brief, cells were fixed for 1 h in prewarmed 2% (vol/vol) glutaraldehyde, 2.5% (mol wt/vol) sucrose, 3 mM CaCl2, and 100 mM Hepes-KOH, pH 7.4. After washes, cells were postfixed using reduced OsO4 (1% [mol wt/vol] OsO4, 10 mg/ml potassium ferrocyanide, 1.25% [mol wt/vol] sucrose, and 100 mM sodium cacodylate, pH 7.4) for 1 h on ice. Cells were then incubated in 2% (mol wt/vol) uranyl acetate for 30 min. After dehydration using 50, 70, 90, and 100% ethanol, samples were embedded in Epon (Fluka). Samples were observed under a transmission electron microscope (EM 902; Carl Zeiss) at an acceleration voltage of 80 kV, and micrographs were acquired using a camera (MegaView 3; Olympus).
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5

Transmission Electron Microscopy of Cells and Tissues

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Transmission electron microscopy assays were performed as previously described [54]. Briefly, cells or human biopsies were fixed for 1 h at 4°C in 1.6% glutaraldehyde in 0.1 mol/L phosphate buffer, pH 7.2, then washed and fixed again in aqueous 2% osmium tetroxide, dehydrated in ethanol, embedded in Epon (Serva, 21045.02), and processed for electron microscopy with a Zeiss EM 902 transmission electron microscope at 80 kV. Ultra-thin sections were cut and stained with uranyl acetate and lead citrate.
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6

Ultrastructural Analysis of Jurkat Cells

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2 × 106 Jurkat cells cultured 72 h with 10% serum or 1% serum were infected with Ad5F35 at MOI 100 for 50 minutes at 37 °C,The cells were then washed with cold PBS and fixed in 2% paraformaldehyde–1.5% glutaraldehyde in 0.1 mol/L sodium cacodylate bufer, pH 7.4, for 2 hours at 4 °C. The cells were washed three times in sodium cacodylate before post fixation in 2% osmium tetroxide for 1 hour. They were then embedded in Alradite and ultrathin sections were counterstained with 2% uranylacetate. Observations were made on a transmission electron microscope Zeiss EM 902. Jurkat cells cultured with 10% serum or 1% serum after 72 h were used as control.
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7

SARS-CoV-2 Infection in HEK293T Cells

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For electron microscopy studies, HEK293T wild-type and CLN7 knockout cells were infected with SARS-CoV-2 for 48 h according to the protocol described above. Cells were then fixed with 3% paraformaldehyde solution (in PBS) for 24 h and then transferred to a 2% glutaraldehyde solution (in 0.1 M sodium cacodylate, pH7.4) for approximately 12 h. Dehydration of the cell pellets was performed according to the following protocol: First, cell pellets were embedded in 1.5% agarose in 0.1 M sodium cacodylate buffer. This was followed by a washing step with 0.1 M sodium cacodylate buffer (3 × 20 min), 1% osmium tetroxide in 0.1 M sodium cacodylate buffer (2 h), 0.1 M sodium cacodylate buffer (3 × 20 min), 50% ethanol (15 min), 70% ethanol (15 min), 90% ethanol (15 min), 96% ethanol (15 min), 100% ethanol (20 min), acetone (3 × 15 min). The pelletized cells were then embedded in Epon at 60°C for 48 h according to standard protocol. To increase contrast, samples were treated with 1% uranyl acetate for 30 min and lead citrate for 1 min. Examination of the sections was performed on an EM902 (Zeiss, Oberkochen, Germany) transmission electron microscope. Digital images were obtained using a 2k CCD camera (Troendle, Moorenweis, Germany).
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8

Ultrastructural Analysis of Brown Adipose Tissue

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Mice were transcardially perfused with a mixture of 4% paraformaldehyde and 1% glutaraldehyde in 0.1 M PB buffer at pH 7.4. Interscapular BAT was removed, and small pieces were prepared with a razor blade. The samples were rinsed three times in 0.1 M sodium cacodylate buffer (pH 7.2–7.4) and osmicated using 1% osmium tetroxide in cacodylate buffer. Following osmication, the samples were dehydrated using ascending ethyl alcohol concentration steps, followed by two rinses in propylene oxide. Infiltration of the embedding medium was performed by immersing the pieces in a 1:1 mixture of propylene oxide and Epon and Anally in neat Epon and hardened at 60°C. Semithin sections (0.5 μm) were prepared for light microscopy mounted on glass slides and stained for 1 minute with 1% Toluidine blue. Ultrathin sections (60 nm) were cut and mounted on copper grids. Sections were stained using uranyl acetate and lead citrate. Thin sections were examined and photographed using an EM902 (Zeiss) electron microscope. Quantification of mitochondrial content was performed using ImageJ.
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9

Electron Microscopy Sample Preparation

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Cells were seeded on coated petri dishes and cultivated until confluency. Then, the cells were fixed with 2.5% glutaraldehyde in 0.1 M sodium cacodylate for 20 min on ice. The cells were rinsed with 0.1 M sodium cacodylate buffer containing 3 μM calcium chloride and incubated in a mixture of 1% OsO4, 0.8% potassium ferrocyanide, 3 μM calcium chloride in 0.1 M sodium cacodylate for 30 min. Then, the cells were washed with double distilled water and stained with 2% uranyl acetate before incubating in increasing EtOH solutions (20%, 50%, 70%, 90%, 100%). Subsequently, the cells were infiltrated with a mixture of 50% EtOH and 50% Durcupan ACM resin (Fluka), and then incubated at least 3 × 2 h in 100% Durcupan and polymerized for at least 48 h at 60 °C in an oven. For TEM, ultrathin sections with a thickness of 70 nm were analyzed on a Zeiss EM902. For electron tomography, semi-thick sections with a thickness of 300–500 nm were poststained in 2% uranyl acetate and Sato lead. As fiducial markers, 20-nm sized gold nanoparticles were deposited on each side of the grid. For each reconstruction, a tilt series of images was recorded at 1-degree tilt increments on a FEI Titan 80–300 (CTWIN) IVEM/STEM. The electron microscopes were operated at 80 kV (Zeiss) and 300 kV (FEI).
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10

Ultrastructural Analysis of Francisella Infection

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J774A.1 cells were infected with Francisella strain W12-1067 (MOI of 10) at 37°C as described above. Cells were fixed 96 h post infection with 2.5% glutaraldehyde in 0.05 M HEPES buffer. Bacteria cultivated in medium T were fixed with 4% paraformaldehyde 5% glutaraldehyde in 0.05 M HEPES buffer for 2 h at RT. All samples were post-fixed with osmium tetroxide (1% in distilled water) and uranyl acetate (2% in distilled water), dehydrated stepwise in a graded ethanol series and embedded in LR White resin (Science Services GmbH, Munich, Germany) which was polymerized at 60°C overnight. Thin sections were prepared with an ultramicrotome (UC-T; Leica, Vienna, Austria) and counterstained with uranyl acetate and lead citrate.
Samples were examined using a transmission electron microscope (EM 902; Carl Zeiss Microscopy GmbH, Jena, Germany) at 80 kV, and the images were recorded using a slow-scan charge-coupled-device camera (Pro Scan elektronische Systeme GmbH, Lagerlechfeld, Germany).
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