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42 protocols using egm 2 mv singlequots

1

Mouse Bone Marrow-Derived Endothelial Cell Isolation

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EPCs were isolated from mouse bone marrow. Male C57BL/6 mice (8 weeks age) mice were sacrificed by cervical dislocation. Briefly, mononuclear cells were separated from the hipbones, femurs, tibiae, shoulder bones, ulnas, vertebra, and sternum using Ficoll density gradient centrifugation and cultured in Endothelial Cell Basal Medium-2 (Lonza, Switzerland), supplemented with EGM-2 MV SingleQuots (Lonza, Switzerland) and 10% fetal bovine serum. Following two days of culture in a 5% CO2 incubator, nonadherent cells were removed by washing with phosphate-buffered saline (PBS) and adherent cells were incubated in fresh medium for a further five days for characterization. For RNA extraction and subsequent experiments, the cells were grown in culture medium supplemented with 1, 10, and 100 nmol/L DHT, which was changed on day 2. On day 7, cells was collected to proceed the next experiments.
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2

Multimodal Immune Cell Characterization

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Peripheral blood mononuclear cells (PBMCs) were separated from the blood samples of 4 healthy volunteers after gradient centrifugation, and cultured in DMEM for adhesion purification. After 2–4 h, suspended lymphocytes were pooled and activated with anti-CD3/CD28 for 1 day and then expanded in DMEM 10% FBS supplemented with 2 U/ml IL-7/IL-15 to obtain proliferative T cells.
Two forms of macrophages were used in our experiments: Adherent fractions of PBMCs were cultured in DMEM 10% FBS supplemented with 20 ng/ml rhGM-CSF for 7 days to induce primary monocyte-derived macrophages (MDMs); PMA-induced macrophages (noted as mTHP-1) were obtained from human monocyte THP-1 cells via a 24-h incubation with 100 ng/ml PMA and cultured in PMA-free medium overnight to reduce their inflammatory baseline.
Burkitt lymphoma Raji cells and human fibroblast HFF-1 cells were respectively cultured in RPMI-1640 and DMEM containing 10% FBS and 50 U/ml penicillin-streptomycin. Human umbilical vein endothelial cells (HUVEC) were cultured in endothelial basal medium supplemented with EGM-2 MV Single-Quots (EGM-2 MV medium, Lonza).
The influenza virus H1N1 (strain A/California/07/2007) was used as the viral stimulus to activate macrophages.
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3

In Vitro Tube Formation Assay

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Tissue culture treated two-chamber slides (Lab-Tek 154852) were pre-chilled overnight and coated with 400 microliters diluted Matrigel (Corning 354264, San Jose, CA, USA). For these studies, high concentration Matrigel was diluted 1:1 with ice-cold growth media before use. Matrigel was allowed to polymerize at 37℃ for 45 min. Concurrently, cells from all lines were trypsinized, filtered, and centrifuged to be re-suspended at 1 × 105 cells/mL in growth media. A preparation was made by further diluting our Matrigel working stock to 4% in ice-cold growth media. Cells were mixed in equal volume with the low concentration Matrigel mixture to achieve a final concentration of 5 × 104 cells/mL in 2% Matrigel. A total of 750 microliters was applied to each chamber. Slides were incubated at 37℃ 5% CO2 and tube formation was photographed starting at 30 min after plating to 4 h when a significant degree of tube formation had occurred. In all experiments, FB were cultured using 20% FBS αMEM (Life Technologies 12571-063) while endothelial cells (PAEC and MVEC) were cultured in EBM-2 with EGM-2 MV SingleQuots (Lonza CC-3156, CC-4147).
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Culturing HUVECs and HDMVECs for Histone H4 Experiments

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HUVECs and HDMVECs purchased from ATCC were cultured in EBM supplemented with EGM-2MV singleQuots (Lonza) without hydrocortisone in 0.2% gelatin-coated tissue culture plates. All experiments were performed using HUVECs of passage 6 or lower. Recombinant histone H4 was purchased from Cayman (catalog 10264) for in vitro experiments. Histone from calf thymus was purchased from MilliporeSigma (catalog 10223565001). Anti–histone H4 was from Cell Signaling Technology (catalog 2592). TLR2 inhibitor C29 was from Medchemexpress (catalog HY-100461), and TLR4 inhibitor TAK 242 was from MilliporeSigma (catalog 614316). Citrullinated histone H4 (catalog 17927), SCH 58261 (catalog 19676), PSB 603 (catalog 25637), and wortmannin (catalog 10010591) were purchased from Cayman.
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5

HTLA Cell-Based GPCR Screening Assay

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HTLA cells (an HEK293 cell line stably expressing a tTA-dependent luciferase reporter and a β-arrestin2-TEV fusion gene) when coupled with the PRESTO-Tango GPCR-ome screening assay are used as a novel tool to validate GPCR-ligand interactions as previously reported (Kroeze et al., 2015 (link)). HTLA cells were grown in DMEM (11965092, Thermo Fisher Scientific, Grand Island, NY) supplemented with 20% FBS (S11150H, Bio-Techne, Minneapolis, MN), penicillin (100 U ml−1)/streptomycin (0.1 mg ml−1) (15140122, Thermo Fisher Scientific, Grand Island, NY), 2-mM L-glutamine (25030081, Thermo Fisher Scientific, Grand Island, NY) and 100 μg ml−1 Hygromycin B (10687010, Thermo Fisher Scientific, Grand Island, NY) (Dogra et al., 2016 (link); Kroeze et al., 2015 (link)). HTLA cells were plated onto their respective poly-l-lysine (102691, MP Biomedicals, LLC) coated plates prior to treatment. Human umbilical vein endothelial cells (HUVECs) were plated on 0.1% gelatin-coated plates and grown in EBM-2 basal medium (CC-3156, Lonza, Walkersville, MD) supplemented with EGM2 MV SingleQuots (CC-4147, Lonza, Walkersville, MD) using 10% FBS and used between passages 2 and 4.
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6

Culturing ccRCC cell lines for conditioned medium

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The human ccRCC cell line Caki-2 was obtained from Sigma-Aldrich, St. Louis, MO, USA (cat. no. 93120819). Caki-1 cells were obtained from ATCC (cat no. HTB-46, Manassas, VA, USA). HUVECs were kindly provided by the Department of Transplantology, Medical College (Krakow, Poland). The cells in the initial vials were expanded and cryopreserved, and cells were propagated with less than fifteen consecutive passages. All cell lines were routinely tested for mycoplasma by PCR every three months. The Caki-2 and Caki-1 cell lines were cultured in Eagle’s minimal essential medium (EMEM; Lonza, Basel, Switzerland) supplemented with 10% fetal bovine serum (FBS). HUVECs were cultured in endothelial basal medium (EBM-2, Lonza) supplemented with EGM-2 MV SingleQuots (Lonza). All cell lines were cultured at 37 °C in a humidified incubator in a 5% CO2 atmosphere. To collect conditioned medium from the Caki-1 and Caki-2 cell lines, cells were cultured for 7 days in the presence of drugs, followed by 24 h in medium supplemented with only 0.5% BSA (BioShop, Burlington, Ontario, Canada); the culture medium was then collected for further analysis.
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7

Endothelial Progenitor Cell Characterization

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The cord blood derived CD34+ HPCs were plated on fibronectin-coated tissue culture flasks and cultured in endothelial basal medium (EBM-2, Lonza) supplemented with EGM-2-MV-SingleQuots (Lonza) and 1% penicillin-streptomycin (Sigma-Aldrich) in a humidified incubator at 37°C with 5% CO2. After 4 days of culture, nonadherent cells were discarded by washing with PBS. Medium were changed every 2 days thereafter. To confirm the EPC phenotype after culturing for 7 days, adherent cells were incubated with DiI-labeled Ac-LDL (Molecular Probes) for one hour before visualizing with an inverted fluorescent microscope (Leica DM IRE2). Immunostaining with antibodies against VEGFR2(Flk-1,1∶50 dilution; Santa Cruz Biotechnology), CD31(1∶100 dilution; Cell Signaling) followed by Cy3-conjugated goat anti-mouse antibody(1∶250 dilution; Invitrogen) was performed, and then cells were visualized with an inverted fluorescent microscope (Leica DM IRE2). After culturing for 14 days, cells were stained with anti-von Willebrand factor antibody FITC (1∶100 dilution; Abcam), or stained with antibodies against VEGFR2 (Flk-1,1∶50 dilution; Santa Cruz Biotechnology), CD31(1∶100 dilution; Cell Signaling) followed by Cy3-conjugated goat anti-mouse antibody(1∶250 dilution; Invitrogen), and then visualized with an inverted fluorescent microscope(Leica DM IRE2).
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8

Keratinocyte Isolation and Culture Protocols

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Human epidermal keratinocytes were isolated from neonatal foreskin as previously described [21] (link) and cultured in KBM-Gold basal medium (Lonza, Walkersville, MD) with growth supplements (KGM-Gold Single-Quot Kit, Lonza). Keratinocytes, no later than passage 4, were switched to 550 µM calcium 16–18 hours prior to experimental manipulation, unless other noted. For the experiments in Figure 4 and Figure 8B, keratinocytes were grown in 50 µM calcium to prevent desmosome assembly for 16–18 hours and then switched to 550 µM calcium for the indicated times. Chinese hamster ovary (CHO) cells were cultured in F12 media (ATCC, Manassas, VA). HMEC-1s were cultured in 0.1% gelatin-coated flasks in EBM-2 media (Lonza) with growth supplements (EGM-2 MV SingleQuots, Lonza). Where indicated, cells were infected 24–48 hours prior to experimentation with adenovirus for expression of Dsg3.GFP, as previously described [32] (link).
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9

Culturing Human Coronary Artery Endothelial Cells

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Human coronary artery endothelial cells (HCAECs), endothelial basal medium-2 (EBM-2), EGM-2-MV SingleQuots, fetal bovine serum (FBS), and phosphate-buffered saline (PBS) were purchased from Lonza (Viviere, Belgium). HCAECs were maintained in EBM-2 supplemented with EGM-2-MV SingleQuots (containing vascular endothelial growth factor, basic fibroblast growth factor, insulin-like growth factor-I, epidermal growth factor, ascorbic acid, and gentamicin), and 10% FBS. All cells were cultured at 37°C in an incubator with a humidified atmosphere and 5% CO2. Cells were split at the ratio of 1:3 every passage. Cells from three to six passages were used in this study. For experiments, HCAECs were grown to confluence, washed with phosphate buffer (PBS), and kept in serum-free medium for 24 h to synchronize the cells, bringing them all to one phase of cell cycle. Afterward, cells were stimulated with medium containing 20% serum collected from Ao or CS of ACS or SA patients for 12 h and then total RNA was isolated following standard procedure and stored at −80°C for further analysis. All experiments have been performed in triplicates.
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10

Ovarian Cancer Cell Lines for VEGF and PDGF Studies

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Human ovarian serous adenocarcinoma cell lines, SHIN‐314 and KOC‐2S,15 were used in this study as they produce high amounts of VEGF and PDGF, respectively.6, 16 These cell lines were cultured in DMEM/F12 (Life Technologies, Carlsbad, CA, USA), supplemented with 10% FCS (Sigma‐Aldrich, St. Louis, MO, USA) and 1% penicillin/streptomycin (Life Technologies). Human umbilical vein endothelial cells were purchased from Kurabo Industries, Ltd. (Osaka, Japan), and cultured in EBM‐2 medium (Lonza, Walkersville, MD, USA) containing EGM‐2‐MV‐SingleQuots (Lonza) and comprising VEGF, FGF, insulin‐like growth factor‐1, epidermal growth factor, and 2% FCS. All cells were cultured at 37°C in 5% carbon dioxide.
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