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26 protocols using gapdh

1

Quantifying Inflammatory Proteins in CIA Mice

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Total proteins were extracted from the paw of CIA mice, and their concentration was determined using a BCA assay (Beyotime). Protein samples were applied and separated on 10% NuPAGE gel (Invitrogen), followed by transferring onto PVDF membranes (Millipore Inc.). Membranes were blocked in 5% non‐fat dry milk and 0.1% Tween‐20 for 1 h, followed by incubation overnight with primary antibody against mouse NF‐κB p50 (Abcam; ab32360), NF‐κB p65 (Cell Signalling; #8242T), Act 1 (Santa Cruz Biotechnology; sc‐100647), TRAF6 (Immunoway; YT4720), IL‐17RA (Absin Bioscience; abs140681) and GAPDH (Absin Bioscience; abs100005) diluted at 1:1000 in blocking solution. Next, the HRP‐conjugated secondary antibody (Absin Bioscience) at a dilution of 1:8000 was used to incubate the membranes for 2 h. Immunoreactive proteins were visualized using Tanon high‐sig ECL Western blotting Substrate and Tanon 5200 multifunction laser‐scanning system (Tanon).
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2

Streptozocin-induced Diabetes Mechanism

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Streptozocin (STZ) was purchased from Sigma Aldrich (Saint Louis, MO, USA). Ethanol (EtOH) was obtained from Bengbu New Chemical Reagent Factory, China. The
antibodies ALDH2 (Cat No. ab196494), caspase-1 (Cat No. 2225) and ASC (Cat No. ab155970) were obtained from Abcam (Cambridge, MA, USA). Antibody NLRP3 (Cat No.
NBP-12446) was purchased from NOVUS (Centennial, CO, USA), and antibody GAPDH (Cat No. Abs118936a) was acquired from Absin Bioscience Inc. (Shanghai,
China).
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3

Protein Extraction and Immunoblotting Protocol

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The total protein was extracted with RIPA lysate containing 1% phosphatase inhibitor and 1% protease inhibitor. Then, the BCA kit was utilized for quantitative protein analysis and the proteins were separated by SDS-PAGE at 8%, 10%, and 12%, according to the target molecular weight. The separated proteins were transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were then floated in 5% skimmed milk with TBST for 1 h at room temperature. After sealing, the membranes were incubated in TBST containing specific antibodies, such as APMAP (1: 1000, Absin, China), GAPDH, β-catenin, E-cadherin, N-cadherin, vimentin, p-GSK3β, GSK3β, snail (1: 1000, cell Signal Technology, United States) at 4 °C overnight. Before and after the secondary antibody goat anti-rabbit antibody (1: 10000, cell Signal Technology, United States) was incubated at room temperature for 1h, the membranes were washed 4 times /5 min by TBST. The protein bands were indicated by the ServiceBio® ECL chemiluminescence kit (Servicebio Biotechnology, China).
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4

Xuesaitong Tablet Protects Diabetic Kidneys

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A Xuesaitong (XST) dispersible tablet was obtained from Yige Pharmaceutical Co. Ltd. (Xiangtan, Hunan, China). Streptozotocin (STZ) was obtained from Sigma-Aldrich company (Sigma-Aldrich, USA). Antibodies of PTEN, PDK1, Nox4, nephrin, and 4′,6-diamidino-2-phenylindole (DAPI) were purchased from Abcam (Cambridge, UK); antibodies of Akt, p-Akt, mTOR, and p-mTOR were acquired from Cell Signaling Technology (Danvers, MA, USA). WT1, GAPDH, and β-Tubulin were purchased from Absin Bioscience Inc. (Shanghai, China). Antibodies of horseradish peroxidase-conjugated rabbit and mouse IgG were obtained from Beyotime Institute of Biotechnology (Shanghai, China). The assay kit for terminal deoxynucleotidyl transferase-mediated dUTP nick end labelling (TUNEL) was obtained from Shanghai Yisheng Chemical Company Limited (Shanghai, China). The assay kit for bicinchoninic acid (BCA) protein was obtained from Biosharp Biotechnology Company Limited.
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5

Protein Expression Analysis in CIA Mice

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Total proteins were extracted from the paw of CIA mice and their concentration was determined using a BCA assay (Beyotime, Nanjing, CHN). Protein samples were applied and separated on 10% NuPAGE gel (Invitrogen, New York, NY), followed by transferring onto PVDF membranes (Millipore Inc., Darmstadt, Germany). Membranes were blocked in 5% non-fat dry milk and 0.1% Tween-20 for 1 h, followed by incubation overnight with primary antibody against mouse NF-κB p50 (Abcam, Cambridge, UK, ab32360), NF-κB p65 (Cell signaling, Danvers, MA, #8242T), Act 1 (Santa Cruz Biotechnology, Santa Cruz, CA, sc-100647), TRAF6 (Immunoway, Suzhou, CHN, YT4720), IL-17RA (Absin Bioscience, Shanghai, CHN, abs140681), and GAPDH (Absin Bioscience, Shanghai, CHN, abs100005) diluted at 1:1000 in blocking solution. Next, the HRP-conjugated secondary antibody (Absin Bioscience, Shanghai, CHN) at a dilution of 1:8,000 was used to incubate the membranes for 2 h. Immunoreactive proteins were visualized using Tanon high-sig ECL Western blotting Substrate and Tanon 5200 multifunction laser-scanning system (Tanon, CHN).
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6

Western Blot Analysis of PDLSCs

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PDLSCs were washed with cold phosphate buffer solution (PBS) and then incubated in RIPA buffer containing proteinase inhibitor and phosphatase inhibitor (Beyotime) on ice. After ultrasonic lysis and centrifugation, protein solutions were collected, and the concentrations of protein were detected by a BCA assay kit (Biotime). All protein samples were separated by SDS-PAGE gels and transferred to PVDF membranes (Millipore, USA). After being blocked with 5% nonfat-dried milk solution (Beyotime) for 1 hour, the membrane was incubated with primary antibodies overnight at 4 °C, including Erk (#4695, CST, USA), phosphorylated-Erk (p-Erk, #9101, CST), RUNX2 (#8486, CST), COL1 (#39952, CST), EID3 (ab124447, Abcam, UK), GAPDH (abs132004, Absin Bioscience, China), and β-actin (BM3873, Boster, China). Then, the membrane was incubated with secondary antibodies for 1 hour at room temperature. Finally, the protein bands on the membrane were detected by enhanced chemiluminescence (Millipore, Billerica, MA, USA) under an Amersham Imager 600.
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7

Evaluating Activin A, TNF-α, and SDF-1α Signaling

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Recombinant human/mouse/rat activin A was provided by R&D systems (Minneapolis, MN, USA). Recombinant murine TNF-α and recombinant murine SDF-1α (CXCL12) were obtained by PeproTech (Rocky Hill, NJ, USA). Cell Counting Kit-8 (CCK-8) was bought from GlpBio Biotechnology Co. (Shanghai, China). NO detection kit was purchased Beyotime Biotechnology Co. (Shanghai, China). Enzyme-linked immunosorbent assay (ELISA) kit for TGF-β1 was obtained from eBioscience (San Diego, USA); ELISA kit for IL-6 was provided by R&D systems (Minneapolis, MN, USA). Reverse transcription-PCR (RT-PCR) kit was purchased from Takara Biotechnology Co. (Dalian, China). The antibodies used for Western blotting were as follow: ActRIIA (Absin), Smad3 (Immunoway), p-Smad3 (Abcam), ERK1/2 and p-ERK1/2 (Cell Signaling), MMP-2 (Absin), MMP-9 (Absin) and GAPDH (Absin).
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8

Protein Expression Analysis of Inflammation and Signaling Pathways

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A quantity of 10 μg of protein was loaded onto a 10% gradient polyacrylamide gel, electrophoretically transferred to a polyvinylidene difluoride membrane and probed with the following primary antibodies: S100A8/A9 (1:1000, Abcam, UK), Col1 (1:2000, Proteintech, China), α-SMA (1:6000, Proteintech, China), JAK2 (1:1000, Proteintech, China), p-JAK2 (Tyr1007) (1:1000, Absin, China), STAT3 (1:2000, Proteintech, China), p-STAT3(Tyr705) (1:1000, Absin, China), RAGE(1:1000, Proteintech, China), TLR4 (1:1000, Proteintech, China),  and GAPDH (1:1000, Absin, China), which was used as an internal control. Secondary antibodies were horseradish peroxidase-conjugated to mouse anti-rabbit/mouse IgG (1:5000, Proteintech, China).
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9

HCC Cell Lysis and Protein Analysis

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To collect and lyse HCC cells, radioimmunoprecipitation assay buffer (RIPA, Solarbio, China) was used. To decrease protease activity, phenylmethylsulfonyl fluoride (Solarbio, China) was added throughout the lysis process. After measuring total cell protein concentrations using a NanoDrop One ultraviolet spectrophotometer (Thermo Scientific), a protein loading buffer (Beyotime Institute of Biotechnology, China) was added, and samples were heated to denature proteins. After that, the protein samples were isolated using a 10% PAGE Gel Fast Preparation Kit (EpiZyme, China) and transferred on 0.45-μm polyvinylidene fluoride membranes (PVDF, Millipore, Germany). The PVDF membranes were then blocked at room temperature for 120 min. PVDF membranes were treated with primary antibodies overnight at 4 °C after being diluted at 1:1000. Then, membranes were incubated with appropriate secondary antibodies (Abcam, USA) for 1 h, and the bands were detected using enhanced chemiluminescence reagents (New Cell & Molecular Biotech, China) and quantified using ImageJ software (NIH Image, Bethesda, MD). The following primary antibodies were used in this study: MCUR1 (Cell Signaling Technology, USA), GAPDH (Absin, China), and P-gp, GP IIb and GP VI (Abcam, UK).
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10

Protein Expression Analysis in Cells

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Total protein of cells and tissues were lysed in RIPA buffer containing 1% PMSF (Beyotime Biotechnology, China), and heated at 95°C for 5 min in 6× protein loading buffer. Western blotting was performed as previous described [10 (link)]. The primary antibodies were as follows: MyoD (sc-377460; 1:1000; Santa Cruz Biotechnology), MyoG (sc-12732; 1:200; Santa Cruz Biotechnology), MyHC (sc-376157; 1:3000; Santa Cruz Biotechnology), E2F3 (A8811; 1:1000; ABclonal), MEF2C (GB111249; 1:500; Servicebio), β-Tubulin (GB11017B; 1:1000; Servicebio), GAPDH (abs132004; 1:3000; Absin). The secondary antibodies were Goat Anti-Mouse IgG (A0216; 1:3000; Beyotime) and Goat Anti-Rabbit IgG (A0208; 1:3000; Beyotime). Intensity of the protein bands were visualized by ImageJ, and relative protein expression level was normalized to that of β-Tubulin or GAPDH.
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