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6 protocols using apc cy7 conjugated streptavidin

1

Isolation and Sorting of Murine Hematopoietic Stem and Progenitor Cells

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Bone marrow cells, which were freshly isolated from tibia and femur of male and female young (3 to 6 month) and old (18 to 24 month) C57BL/6 mice, were enriched by magnetic activated cell separation (Miltenyi Biotech, Bergisch Gladbach, Germany), immunolabeled with Sca-1 and lineage antibodies and sorted by FACS118 (link). In brief, crushed bone samples were incubated with allophycocyanin (APC)-conjugated anti-mouse c-Kit (clone 2B8; 1:100; # 17-1171; Thermo Fisher Scientific) for 30 min at 4 °C and combined after washing with anti-APC microbeads (Miltenyi Biotech). cKit+ cells were magnetically enriched using a LS column (Miltenyi Biotech) and incubated with lineage cell detection cocktail-biotin (# 130-092-613, Miltenyi Biotech) for 30 min at 4 °C and with APC anti-mouse c-Kit (clone 2B8; 1:100; # 17-1171; Thermo Fisher Scientific), PE/Cy7 anti-mouse Sca-1 (clone E13-161.7; 1:100; # 122513; BioLegend, San Diego, CA), and APC/Cy7-conjugated streptavidin (1:100; # 405208; BioLegend) overnight at 4 °C. After staining with DAPI, Lin- cKit+ ScaI+ (KSL) cells and Lin- cKit+ ScaI- myeloid progenitor (MP) cells were sorted using a FACSAria II instrument (BD Biosciences, Franklin Lakes, NJ). FlowJo software was used for data analysis.
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2

Murine Hematopoietic Stem Cell Analysis

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A total of 2 × 105 cells were incubated with FcR blocking antibody (BioLegend #101320), 7AAD, and lineage cocktail biotin–conjugated antibody (BioLegend #79750, #79748, #79752, #79748, #79749), and stained with APC-Cy7-conjugated streptavidin (BioLegend #405208), anti-mouse Sca-1 BV510–conjugated antibody (BioLegend, #108129), and anti-mouse-c-KIT APC–conjugated antibody (BioLegend, #105812). After staining and washing, cells were analyzed on a CANTO II (BD) flow cytometer.
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3

Multiparametric Flow Cytometry Analysis

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Cell surface markers and intracellular cytokines were analyzed and cell sorting was performed by FACS Vantage (BD Bioscience). Endogenous Fc receptors were blocked using an anti-mouse CD16/CD32 antibody (2.4.G2; BD Bioscience) and subsequently stained using fluorescein isothiocyanate, phycoerythrin, allophycocyanin (APC), APC-Cy7, and the following biotin-conjugated antibodies. Anti-mouse Ly-6G (1A8), Ly-6C (AL21), CD25 (PC61), NK1.1 (PK136), CD3 (17A2), CD8a (53-6.7), IL-17A (TC11-18H10), and Annexin V antibodies were obtained from BD Bioscience. Anti-mouse F4/80 (BM8), CD4 (GK1.5), CD11c (N418), CD45R/B220 (RA3-6B2), CD62L (MEL-14), CD44 (IM7), and CD69 (H1.2F3) antibodies were obtained from Biolegend (San Diego, CA, USA). Anti-mouse CD11b (M1/70) and IFN-gamma (XMG1.2) antibodies were obtained from eBioscience (San Diego, CA, USA). APC-Cy7-conjugated streptavidin was obtained from Biolegend. Intracellular cytokine staining was performed with Fixation/Permeabilization Concentrate and Diluent (eBioscience) following the manufacturer’s protocol.
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4

Immunophenotyping of Muscle-Resident Stem Cells

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To avoid non-specific antibody binding, cells were treated with anti-mouse CD16/32 Fc binding blocker (eBioscience, San Diego, CA) for 10 minutes at 4°C. After one PBS wash, cells were stained with PE-conjugated anti-mouse CD45 antibody, PE-Cy7-conjugated anti-mouse c-Kit antibody, FITC-conjugated anti-mouse Sca-1 antibody and APC-Cy7-conjugated anti-mouse Mac-1 (CD11b) antibody (all from Biolegend, San Diego, CA). Pacific Blue-conjugated anti-mouse F4/80 antibody (Biolegend) was used to remove macrophages from CD45(+) c-Kit(+) cells in muscle tissue surrounding femurs. To further characterize CD45(+) c-Kit(+) Sca-1(+) cells, biotin-conjugated anti-mouse CD150 antibody (Biolegend), anti-mouse CD34 antibody (Biolegend) and anti-mouse EPCR antibody (Biolegend) were used for staining and were then detected using V500-conjugated streptavidin (BD Bioscience). To analyze lineage marker expression, cells were stained with biotin-conjugated anti-mouse Ter119, Gr-1, CD4, CD8, B220 and Mac-1 or F4/80 antibodies, followed by detection using APC-Cy7-conjugated streptavidin (all from Biolegend). Cells sorted with BD FACS Aria (BD Bioscience) were collected into RNAlater® (Life Technologies, Carlsbad, CA) for gene expression analysis. Cells used for morphological analysis were sorted into medium containing 10% FBS and stained using May-Grünwald Giemsa staining.
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5

Comprehensive Phenotypic Characterization of Blood Cells

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BM cells were suspended in FACS buffer (2.5% BSA; 0.5 mM EDTA, in PBS) following red cell-lysis with 0.8% NH4Cl buffer. Phenotypic surface markers were labeled using PE-conjugated anti-CD3/B220/Ter119, FITC anti-CD11b, PerCP-Cy5.5 anti-Ly6C, APC anti-Ly6G or CD11b, and Biotin anti-CD115 antibodies and APC Cy7 conjugated streptavidin (Biolegend). Cells were stained with 7AAD (BD Bioscience, UK) to assess cell death. For hematopoietic stem cell (HSC) analysis, PE-conjugated lineage cocktail and PE-conjugated isotype antibodies were used alongside FITC anti-Sca-1 and APC anti-CD117 antibodies. Data were acquired using a FACS Canto flow cytometer and analyzed using FlowJo Software (Tree Star Inc, OR, USA, version 8.8.7) and populations were gated using isotype and fluorescence minus one controls.
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6

Identification of Immune Cell Populations

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The following Abs were purchased from BD Pharmingen: allophycocyanin (APC)-conjugated anti-CD49b (HM2), phycoerythrin (PE)-conjugated anti-Siglec-F (E50-2440), and anti-NK1.1 (PK136). Unlabeled anti-IL-3 (MP2-8F8) and rat IgG1 isotype (RTK2071); biotin-conjugated anti-CD49b (DX5), anti-CD123 (IL-3R, 5B11), anti-FcRI (MAR-1), anti-I-A/I-E (M5/114.15.2), American hamster IgG isotype (HTK888), and rat IgG2a isotype (RTK2758); PE-conjugated CD200R3 (Ba13), anti-IgE (RME-1), and anti-CD4 (RM4.5); APC-conjugated anti-Gr-1 (RB6-8C5), anti-B220 (RA3-6B2), and anti-F4/80 (BM8); PE/Cy7-conjugated anti-c-kit (2B8) and anti-CD45 (30-F11); Brilliant Violet 421-conjugated anti-CD3 (145-2C11) and anti-CD11c (N418); and APC/Cy7-conjugated streptavidin were from BioLegend. PE-conjugated CD11b Abs (M1/70) were obtained from eBioscience. Anti-STIM1 (D88E10), anti-STIM2 (4917), and anti--tubulin (2144) were from Cell Signaling Technology. TNP-specific IgE (IGEL-b4) and anti-CD16/32 (2.4G2) were prepared in our laboratory. TAM (T5648), DT (D0564), inactive mDT (D2189), EGTA, BAPTA-AM, and DPI were purchased from Sigma-Aldrich. Recombinant mouse IL-3 and IL-33 were obtained from BioLegend.
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