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17 protocols using 60 f254 tlc plate

1

Synthesis and Purification of Short Oligonucleotides

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The β-L-RNA phosphoramidite monomers were purchased from ChemGenes. All oligonucleotides were synthesized on a MerMade12 (BioAutomation) RNA/DNA synthesizer using standard phosphoramidite chemistry. Thin-layer chromatography (TLC) purification of the oligonucleotides of length 6–12 nt was carried out on Merck 60 F254 TLC plates with the 1-propanol/ammonia/water = 55:35:10 (v/v/v). The oligonucleotides of length 13–32 nt were purified by polyacrylamide gel electrophoresis. Details of the deprotection and purification of oligonucleotides have been previously described [24 (link)]. The composition of all oligonucleotides was confirmed using MALDI-TOF mass spectrometry, (Bruker Autoflex, S1 Table).
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2

Radiolabeling of [99mTc](Tc(CO)3)+ Complex

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[99mTc][TcO4] (2200–2500 MBq in 400 μL saline), eluted from a Drytec generator (GE Healthcare, Amersham, UK) was added to an Isolink kit (donated by Covidien, Petten, The Netherlands) following the manufacturer’s instructions. Quality control was performed by thin layer chromatography (TLC) using silica gel 60F254 TLC plates (Merck Millipore, Darmstadt, Germany) with a mobile phase of 1% HCl in methanol (in which [99mTc][TcO4] has Rf = 0.9, 99mTc colloids have Rf = 0, and [99mTc][Tc(CO)3]+ has Rf = 0.2–0.8 (SI Figure S1). Chromatograms were analyzed with a gamma TLC plate scanner (Lablogic, UK). In all experiments, the product [99mTc][Tc(CO)3]+ was >95% radiochemically pure with <<1% contamination with 99mTc-colloid (see SI Figure S36).
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3

Lipid Extraction and Analysis Protocol

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Membrane suspensions were treated as in Castegnaro et al. [69 (link)] for lipid extraction supplementing D-sphingosine or Ceramide 6:0, as internal standards. The resulting lipid residue was resuspended and applied to 60F 254 TLC plates (Merck, Darmstadt, Germany) and eluted with a mobile phase of CHCl3:CH3OH:CH3COOH, 94:1:5, v:v:v [70 (link)] for ceramide detection and with CHCl3: CH3OH:CaCl2 0.22 %, 60:35:8, v:v:v for glucosylceramide detection [71 (link)]. Plates were then developed with a cupper solution [72 ].
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4

Analytical Characterization of Organic Compounds

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Merck 60 F254 TLC plates were used in monitoring the reactions.
1H NMR spectra were recorded with an INOVA 400 instrument with a 5 mm probe. All chemical shifts were quoted relative to deuterated solvent signals (δ in ppm and J in Hz).
HPLC-MS analysis was carried out with an Agilent Technologies HP1100 instrument, equipped with a ZOBRAX-Eclipse XDB-C8 Agilent Technologies column (flow: 0.4 mL/min; mobile phase: CH3CN/H2O gradient from 30 to 80% CH3CN in 8 min and then 80% CH3CN until 25 min), coupled with an Agilent Technologies MSD1100 single-quadrupole mass spectrometer (full-scan mode from m/z 50 to 2600; scan time of 0.1 s in positive ion mode, ESI spray voltage of 4500 V, nitrogen gas of 35 psi (1 psi = 6894.7 Pa), drying gas flow of 11.5 mL/min, fragmentor voltage of 20 V).
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5

TLC Fingerprinting of n-Hexane Fraction from Vitex negundo Leaves

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n-Hexane fraction (100 mg) of V. negundo leaves was dissolved in 40 mL of n-hexane and the volume was made up to 50 mL in a volumetric flask. This fraction was used for the TLC (thin layer chromatography) fingerprinting profile. TLC plates consisted of 10 × 10 cm, precoated with silica gel 60 F254 TLC plates (E. Merck) (0.2 mm thickness) with aluminum sheet support. The spotting device was a CAMAG Linomat V Automatic Sample Spotter (Camag Muttenz, Switzerland); the syringe was 100 µL (Hamilton). The developing chamber was a CAMAG glass twin trough chamber (20 × 10 cm), densitometer a Camag TLC Scanner 3 linked to winCATS software. The experimental conditions were kept constant where temperature was 25 ± 2°C and relative humidity was 40%. TLC fingerprint was developed by applying 25 µL of n-hexane fraction (100 mg/50 mL) in duplicate along with standards, lupeol, and β-sitosterol with band distance of 12 mm and band size of 8 mm. Plate was developed in a solvent system of toluene : methanol (9.7 : 0.3), dried and observed under UV 254 nm and UV 366 nm. The plate was derivatized with anisaldehyde-sulfuric acid reagent followed by heating at 100°C until the colored band appeared. The RF value and color of the resolved bands were noted.
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6

Automated Oligonucleotide Synthesis and Purification

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All oligonucleotides were synthesized on a MerMade12 (BioAutomation) synthesizer using standard phosphoramidite chemistry49 (link). FAM-labeled oligonucleotides were synthesized using fluorescein-labeled phosphoramidite. Thin-layer chromatography (TLC) purification of oligonucleotides of length 12 nt was performed on Merck 60 F254 TLC plates with 1-propanol/ammonia/water = 55:35:10 (v/v/v). Oligonucleotides of length 32 nt were purified by polyacrylamide gel electrophoresis. The details of deprotection and purification of oligonucleotides have been described previously50 (link). Purified oligonucleotides were characterized using MALDI-TOF mass spectrometry.
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7

Synthesis and Characterization of Oligoribonucleotides

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Oligoribonucleotides for UV-melting experiments, DNA primers for PCR reactions, and 5′-FAM labeled DNA primers for reverse transcription in SHAPE experiments were synthesized on a BioAutomation MerMade12 DNA/RNA synthesizer using β-cyanoethyl phosphoramidite chemistry as described previously [52 (link)], and commercially available phosphoramidites (ChemGenes (Wilmington, MA, USA); GenePharma (Shanghai, China)). The details of deprotection and purification of oligoribonucleotides were also described previously [52 (link)]. Thin-layer chromatography (TLC) purification of the oligonucleotides was carried out on Merck 60 F254 TLC plates with the mixture of 1-propanol/aqueous ammonia/water = 55:35:10 (v/v/v). After synthesis and purification, oligonucleotides were verified using mass spectroscopy (MALDI-ToF).
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8

Total Lipid Extraction and TLC Analysis

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Total lipids extraction and TLC analysis were performed according to the protocol described by Mu et al.23 (link). In brief, 10 mg of ENPs were mixed with equal volume of chloroform and methanol and centrifuged at 2000 rpm for 5 min at room temperature. The organic phase obtained was dried under a stream of nitrogen and suspended in chloroform. The extracted lipids were resolved through silica gel 60 F254 TLC plates (Merck) using chloroform/methanol/acetic acid (95:4.5:0.5, by volume) as a solvent system. Plates were dried at room temperature and sprayed with a solution containing 10% copper sulfate and 8% phosphoric acid. Lipid bands were visualized by charring the plates at 120 °C for 10 min.
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9

Isolation of Compounds from P. longiflora Roots

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EtOAc extract was prepared from a fine powder of P. longiflora roots (250 g). The extract was filtered, and the solvent was removed under reduced pressure using a rotary evaporator at 40 • C to obtain 29 g of crude extract.
The dry residues (1.5 g) were separated with an open column packed with silica gel (15 g) and eluted under step gradient with n-hexane and EtOAc, from 100% n-hexane to 30% n-hexane in EtOAc. Collected fractions were analyzed by TLC (silica gel 60F254 TLC plates from Merck, Darmstadt, Germany) and developed with a mobile phase of n-hexane: EtOAc (3:1, v/v) and HPLC-UV method using the conditions previously described. 23 mg of compound (1) was obtained from fractions 44-57 eluted with 0-2% EtOAc in n-hexane, and 7 mg of compound (4) was obtained from fractions 165-169 eluted with 40% EtOAc in n-hexane.
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10

Synthetic Procedures for Bioactive Intermediates

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General: The solvents and reagents utilized in this study were purchased from commercial suppliers and employed without additional purification. The reaction progress was observed by thin-layer chromatography (TLC) using a silica gel 60 F254 TLC plate manufactured by Merck. 1H and 13C NMR spectra were obtained using a Bruker Advance 400 MHz spectrometer, with deuterated dimethylsulfoxide (DMSO) as the solvent. Chemical shifts (δ) are expressed in parts per million (ppm) relative to the internal standard tetramethylsilane (TMS). The abbreviations s, d, t, and m are commonly used to denote singlet, doublet, triplet, and multiplet, respectively. The reported units for coupling constants (J) are hertz (Hz). The acquisition of high-resolution mass spectra (HRMS) was performed using either the Waters Acquity UPLC/Synapt G2 QTOF MS or the JMS 700 mass spectrometer manufactured by Jeol, Japan. The starting material 1 [33 (link)] and key intermediate 2 [34 (link),35 (link)] were prepared adopting the reported procedure.
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