For stereological analysis, 3 sections (−1.46, −2.06, and −2.46 mm from the bregma) were analyzed using the Stereo Investigator software. For each section, the cornu ammonis 1 through 3 (CA1/CA2, CA3) areas and the dentate gyrus area were defined and expressed as ratio of total hippocampus area for both hemispheres. Photographs were obtained with a Nikon C80i microscope equipped with a QImaging® color camera.
Thionin
Thionin is a staining dye commonly used in biological and medical applications. It is a metachromatic dye that can bind to nucleic acids, allowing for the visualization of cellular structures under a microscope. Thionin is a simple, cost-effective staining solution that can be used in a variety of laboratory settings.
Lab products found in correlation
33 protocols using thionin
Hippocampal Morphometric Analysis Protocol
For stereological analysis, 3 sections (−1.46, −2.06, and −2.46 mm from the bregma) were analyzed using the Stereo Investigator software. For each section, the cornu ammonis 1 through 3 (CA1/CA2, CA3) areas and the dentate gyrus area were defined and expressed as ratio of total hippocampus area for both hemispheres. Photographs were obtained with a Nikon C80i microscope equipped with a QImaging® color camera.
Immunohistochemical Analysis of Neural Markers
Nissl Staining for Anatomical Overview
Perfusion and Tissue Processing for Brain Analysis
Visualizing Neuroanatomical Infusion Sites
Quantifying Brain Infarct Volume
The sections were then photographed using a charge coupled device (CCD) camera (Cohu Inc., San Diego, CA, USA) mounted above a lightbox (Biotec-Fischer Colour Control 5000, Reishkirchin, Germany) using IS capture imaging software. Infarct volume was analysed using image analysis software (Image J, version 1.52a, NIH, Bethesda, MD, USA, available at
Visualization and Quantification of ARC Neurons
Visualizing ARC Lesions via Thionin and NPY Staining
Hippocampal Subfield Volume and Astrocyte Analysis
Nissl Staining and Cell Quantification
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