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18 protocols using 3 isobutyl 1 methyl xanthine (ibmx)

1

Biochemical Compound Acquisition Protocol

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Silymarin and silibin were obtained from Sigma Aldrich, St. Louis, MO, USA; milrinone, rolipram, and IBMX were obtained from Cayman, Ann Arbor, MI, USA.
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2

Adipogenesis Modulation in C3H10T1/2 Cells

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The C3H10T1/2 cell line has been used to evaluate the effect of different compounds on adipogenesis processes, as previously shown [41 (link),42 (link),43 (link)]. C3H10T1/2 cells (ThermoFisher Scientific, Paislay, Scotland, UK) were cultured in DMEM medium supplemented with 100 U/mL penicillin (Gibco, Rodano, Milan, Italy), 100 µg/mL streptomycin (Gibco, Rodano, Milan, Italy) and 10% FBS at 37 °C in 5% CO2/95% air atmosphere. Cells were plated in 6-well plates at a concentration of 3.5 × 104 cells/mL, and when they reached 80% confluence (day –2), they were treated with 10 ng/mL of ProBDNFVal or ProBDNFMet synthetic peptide (Alomone Labs, Jerusalem, Israel) [44 (link),45 (link),46 (link)] to simulate the kinetics of BDNF expression occurring in physiological conditions during adipogenesis [47 (link)]. Forty-eight hours later (day 0), cells were treated with adipogenic commitment mix (5 µg/mL insulin, 2 µg/mL dexamethasone, 0.5 mM IBMX, and 5 µM rosiglitazone; all from Cayman Chemical, Arcore, Italy). insulin (5 µg/mL) was added at days 3, 5, and 7, and complete differentiation of the cells was reached at day 9.
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3

A375 Cell Stimulation Assay

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Human A375 cells were trypsinized, centrifuged at 300 g for 3 min, and counted for viability then 500,000 viable cells per well were seeded in a six well TC treated plate. After 6 h and confirming cell attachment, media was aspirated, and fresh media was added with either DMSO, 200 µM IBMX (Cayman Chemical, 13347), or 20 µM Forskolin (EMD Millipore, 344270). Cells were incubated in drugs for 72 h and then harvested for qRT-PCR or Seahorse Mito Stress Test.
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4

Isolation and Adipogenic Differentiation of Mouse Mesenchymal Stem Cells

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To obtain whole mouse (C3H, KaLwRij or C57BL/6J) BM, tibia and femora dissected from mice were cut at both ends and placed into the tip of a 200 μL pipette that was then placed in a microcentrifuge tube and centrifuged at 200 g for 2 minutes. Whole BM was then either seeded directly on scaffolds, or cultured in mouse MSC (mMSC) basal media (DMEM, 10% FBS and 1X Antibiotic-Antimycotic (100 U/ml penicillin, 100 μg/ml streptomycin, 0.25 μg/ml fungizone)) on tissue culture plastic to isolate mMSCs, which were expanded to passage 2–4 before being used. mMSCs were differentiated into adipocytes at two days post-confluence; adipogenic differentiation was induced with a 4-day treatment with induction media (basal media supplemented with 500 μM IBMX, 1 μM rosiglitazone (Cayman Chemical, Ann Arbor, MI), 1 μM dexamethasone, and 10 μg/mL insulin). This media was replaced with basal media supplemented with 10 μg/mL insulin and 1 μM rosiglitazone at day 4 and then maintained in basal media supplemented with 10 μg/mL insulin at day 7 and thereafter.
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5

GPCR cAMP Signaling Quantification

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Measurement of ligand-induced cAMP generation in GPR10 WT stably expressing cells was done using HitHunter® cAMP assay (DiscoverX, 90-0075SM) according to manufacturer’s protocol with modifications. 20,000 cells/well were seeded in a white poly-D-lysine coated 96-well plate and cultured overnight. The following day, cells were washed with PBS and incubated in 30 μL PBS supplemented with 1 mM 3-­isobutyl-1-methylxanthine (IBMX, Cayman Chemical, 13347) for 30 min prior to stimulation with an agonist. Cells were stimulated with serial dilutions of PrRP-31 (1.5 μL/well, 20x dilution, Bachem, 4028740) for further 30 min at 37 °C. Intracellular cAMP detection was carried out directly after the ligand stimulation. 10 μL anti-cAMP antibody followed by 40 μL chemiluminescent substrate/lysis buffer/enzyme donor-cAMP complex mix prepared according to manufacturer’s protocol were added and plates were incubated shaking for 1 h at ambient temperature. Finally, 40 μL enzyme acceptor was dispensed and chemiluminescent signal was quantified after 4-5 h in a TopCount 9012 Microplate Counter (Packard).
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6

3T3-L1 Cell Differentiation Assay

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DMEM, OptiMEM, penicillin-streptomycin, PBS and sodium pyruvate were obtained from Gibco by Life Technologies (Carlsbad, CA, United States), SYBR green MicroAmp Fast Optical 96-well Reaction Plate 0.1 ml and StepOnePlus thermocycler were obtained from Applied Biosystems (Foster City, CA, United States). FCS was purchased from Capricorn (Ebsdorfergrund, Germany). New born calf serum was purchased from Biochrom (Berlin, Germany). All primer pairs were purchased from Eurofins (Friedrichsdorf, Germany). Cell culture flasks (T75, Cell+, vented cap) and 6-well plates for sub-culturing 3T3-L1 cells were obtained from SARSTEDT (Nümbrecht, Germany). Rosiglitazone, pioglitazone, zafirlukast, montelukast, IBMX and (±)14(15)-EET-d11 were purchased from Cayman Chemical (Ann Arbor, MI, United States). Insulin, dexamethasone and Oil Red O were obtained from Sigma Aldrich (St. Louis, Missouri, MO, United States). Tris, Triton-X-100, NP-40, NaCl, EDTA and SDS were purchased from AppliChem (Darmstadt, Germany).
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7

C2C12BRELuc Reporter Cell Line Protocol

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The C2C12BRELuc reporter cell line [41 (link)] was generated by the Inman group and used in this study. In this cell line, the luciferase (Luc) reporter is under the control of the BMP response elements (BRE) of the Id1 gene. C2C12BRELuc were cultivated in culture medium (Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% heat-inactivated fetal bovine serum (FBS) and antibiotics (100 U/mL penicillin and 100 μg/mL streptomycin, all from Biochrom AG, Berlin, Germany). C2C12BRELuc cells were passaged twice per week in a 175 or 225 cm2 cell culture flask. The cultivation media was supplemented with the antibiotic G418 (0.7 mg/mL) to select for the BREluc-positive C2C12BRELuc cells in accordance with previous studies [41 (link)].
C2C1BRELuc cells were sub-cultivated at a ratio of 2.5–5 × 104 cells per mL of culture medium. DMEM, antibiotics, FBS, and trypsin (Biochrom AG, Berlin, Germany) were used in cell cultivation and passaging. To ensure the viability and to calculate cell number, the metabolic activity of cells was calculated through Presto Blue® assay (Invitrogen by Life Technologies Co., Carlsbad, CA, USA). BMP2 was purchased from Osteogenetics (Würzburg, Germany). H89 was purchased from AbCam (Cambridge, UK). Deta NONOate, SNAP, YC-1, LY83583, LDN-193189, and IBMX were purchased from Cayman Chemical (Ann Arbor, MI, USA).
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8

Cellular Signaling Pathway Modulation

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Forskolin, IBMX, bafilomycin and epoxomicin were purchased from Cayman, Leupeptin from US Biological, cycloheximide from Calbiochem, SAG (Smoothened AGonist) from Enzo and CellTracker Deep Red from Thermo.
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9

Forskolin, IBMX, and EET Modulate CFTR Activity

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Forskolin, IBMX (Isobutylmethylxanthine), 14(R),15(S)-EET, 14,15-EEZE and prostaglandin E2 (PGE2) were purchased from Cayman Chemical (Ann Arbor, MI); 14,15(±)-EET was synthesized in-house [21 (link)]. Although the majority of the experiments were performed using 14,15(±)-EET, 14(R),15(S)-EET was occasionally used, with no qualitative differences observed between the two compounds thus they were labeled throughout non-discriminately as 14,15-EET or EET; CF172 (CFTRinh-172, 4-[4-Oxo-2-thioxo-3-(3-trifluoromethyl-phenyl)-thiazolidin-5-ylidenemethyl]-benzoic acid) was kindly provided by Dr. Robert Bridges (Rosalind Franklin University, Chicago, IL) and The Cystic Fibrosis Foundation (CFF).
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10

Genipin-mediated Adipocyte Differentiation

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Genipin was purchased from BOC Sciences (Shirley, NY, USA) with purity > 98%; U73122 was from Tocris Bioscience (Pittsburgh, PA, USA); Dulbecco’s Modified Eagle Medium (DMEM) was from Hyclone (GE Healthcare Bio-Sciences, Pittsburgh, PA, USA); fetal bovine serum (FBS) was from GenClone (Genesee Scientific, EL Cajon, CA, USA); penicillin–streptomycin was from Sigma (St. Louis, MO, USA); poly-D-lysine was from MP Biomedicals (Solon, OH, USA); trypsin-EDTA and GLP-1 ELISA kits for in vitro experiments were from MilliporeSigma (Burlington, MA, USA); Fluo-4AM was from ThermoFisher Scientific (Waltham, MA); bovine serum albumin (BSA), diprotin A, methylcellulose, IBMX, cyclic AMP ELISA kit, alanine aminotransferase (ALT) kit, and triglycerides colorimetric assay kit were from Cayman (Ann Arbor, MI, USA); leptin assay kit was from Bertin Pharma (Montigny-le-Bretonneux, France); total GLP-1 ELISA kits for plasma assay were from Crystal Chem (Elk Grove Village, IL, USA); CellTiter-Blue® cell viability assay reagent was from Promega (Madison, WI, USA); glucose meter and strips were from AgaMatrix (Salem, NH, USA); and all other chemicals were from Sigma (St. Louis, MO, USA).
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