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8 protocols using mab2736

1

Immunofluorescence Assay for Stem Cell Markers

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Cells cultured in 24-well dishes were fixed in 4% paraformaldehyde and permeabilized with 0.25% Triton X-100, followed by blocking with 3% BSA in PBS. Then cells were probed with primary antibodyin 3% BSA for 1 h at 4°C and secondary antibodyin 3% BSA for 30 min at room temperature. A drop of Vectashield mounting medium with 4′, 6-diamidino-2-phenylindole (DAPI; Vector Laboratories) was placed on the microscope slide and the cover slip was sealed with nail polish in a way that the ES cells were in contact with the mounting medium. Staining signal was then observed through the Axio Observer A1 inverted light microscope (Zeiss). Primary antibody used were: anti-Oct4 (sc-8628, Santa Cruz), and anti-Nanog (sc-33760, Santa Cruz), anti-Sox2 (sc-99000, Santa Cruz), anti-Rex1 (sc-377095, Santa Cruz), anti-SSEA-1 (mab34301, Millipore), anti-alpha smooth muscle Actin (ab5694, Abcam), anti-Nestin (mab2736, R&D), anti-Gata4 (sc-25310, Santa Cruz).
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2

Characterizing Hypoxia-Induced Stemness Markers

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Sorted cells were cultured under hypoxia for 48 h to detect the expression of CD133, SOX-2, OCT-4, Lin-28A, KLF-4, Nanog, CD15 and NESTIN. The sorted cell lines were exposed to hypoxia for 48 h, and 4% paraformaldehyde was used to fix the cells at 4 °C for 10 min. The cells were washed with PBS, and 10% serum in PBS containing 0.5% Triton X-100 was used to block the cells. The cells were then incubated for 24 h at 4 °C with primary antibodies against CD133 (1 : 150, MBS462020, MyBiosource, San Diego, CA, USA), SOX-2 (1 : 100, MAB2018, R&D Systems), KLF-4 (1 : 100, Human: AF3640; Mouse: AF3158; R&D Systems), OCT-4 (1 : 100, MAB1759 R&D Systems), Nanog (1 : 100, Human: AF1997; Mouse: AF2729 R&D Systems), Lin-28A (1 : 100, NBP1–49537, Novus Biologicals), CD15 (1 : 100, MAB2155, R&D Systems) or NESTIN (1 : 100, MAB2736, R&D Systems). The cells were then washed with PBS three times. Appropriate fluorophore-labeled secondary antibodies were added to the cells and incubated at 37 °C for 1 h. Images were acquired with a laser scanning confocal microscope (LSM780, ZEISS, Jena, Thuringia, Germany).
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3

Hypoxia-Induced Stem Cell Marker Analysis

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Proteins were collected from sorted cells after hypoxia exposure for 0, 12, 24, 48 and 72 h. We then subjected the proteins to SDS-PAGE and transferred them to nitrocellulose membranes, which were blocked with 5% non-fat milk and incubated with primary antibodies against CD133 (1 : 1000, MBS462020, MyBiosource, San Diego, CA, USA), SOX-2 (1 : 1000, MAB2018, R&D Systems, Minneapolis, MN, USA), KLF-4 (1 : 1000, Human: AF3640; Mouse: AF3158 R&D Systems), OCT-4 (1 : 1000, MAB1759, R&D Systems), Nanog (1 : 1000, Human: AF1997; Mouse: AF2729 R&D Systems), Lin-28A (1 : 1000, NBP1–49537, Novus Biologicals, Littleton, CO, USA), CD15 (1 : 1000, MAB2155, R&D Systems) or NESTIN (1 : 1000, MAB2736, R&D Systems). β-Actin was used as an internal control.
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4

Immunostaining of Neural Cell Types

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For immunostaining, at each stage of neural differentiation (NECs and NRPCs), cells were sectioned onto glass slides. Sectioned NECs and NRPCs and cultured NPCs in six-well plates were fixed with 4% paraformaldehyde. Fixed sections and NPCs were permeabilized with 0.3% Triton X in PBS and then subsequently blocked with 2% BSA in PBS/Tween 20. The slides were then incubated overnight at 4°C with a primary antibody (MAB2736; R&D Systems). The following day, sections and NPCs were washed with PBS and incubated for 1 hour at room temperature (RT) with goat anti-mouse secondary antibody (Alexa Flour 568-red for NECs, NRPCs and NPCs; Thermo Fisher Scientific) and imaged under a fluorescent microscope (Leica CTR 6000; Leica Microsystems, Wetzlar, Germany).
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5

Immunofluorescence Staining of Cultured Cells

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Cultured cells were fixed with 4% paraformaldehyde (PFA) in PBS for 15 min following a pretreatment with 2% PFA in the culture medium for 30 min at room temperature. After being washed, cells were incubated in PBS containing 0.2% Triton X-100 (Sigma-Aldrich) and 10% FBS with primary antibodies at 4°C overnight. Primary antibodies specific to the following proteins were used: CNPase (mouse IgG1 1:250; ab6319; Abcam), GFAP (rabbit IgG 1:1000; ab7260; Abcam), human CD63 (mouse IgG1 1:200; 556019; Becton Dickinson), MAP2 (mouse IgG1 1:200; M1406; Sigma-Aldrich), nestin (mouse IgG2a, 1:200; MAB2736; R&D Systems, MN, USA), rat CD63 (mouse IgG1 1:200; MCA4754GA; AbD Serotec) and SOX2 (rabbit IgG 1:200; ab97959; Abcam). After cells were stained with Alexa Fluor 546 mouse IgG1 (1:2000; Life Technologies), Alexa Fluor 546 mouse IgG2a (1:2000; Life Technologies), Alexa Fluor 546 rabbit IgG (1:2000; Life Technologies), Alexa Fluor 488 mouse IgG1 (1:200; Life Technologies) and Alexa Fluor 488 rabbit IgG (1:200; Life Technologies), they were observed through a BIOREVO BZ-9000 (Keyence, Osaka, Japan) fluorescence microscope. Hoechst 33342 was used to stain cell nuclei.
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6

Immunostaining of Pluripotent Stem Cells

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Cells were cultured on coverslips were fixed and then probed with primary antibody, washed with PBST, probed with secondary antibody in the dark and washed with PBST again. The cells were stained with Vectashield mounting medium containing 4′, 6- diamidino-2-phenylindole (DAPI; Vector Laboratories) before observed under a confocal microscope (Olympus FV1000). Primary antibodies used for probing iPS cells were anti-Oct4 (sc-8628, Santa Cruz), anti-SSEA-1 (mab34301, Millipore) and anti-Nanog (sc-33760, Santa Cruz). As for probing EBs, primary antibodies used were anti-alpha smooth muscle Actin (ab5694, Abcam), anti-Gata4 (sc-25310, Santa Cruz) and anti-Nestin (mab2736, R&D). Secondary antibodies used to probe iPS cells were Alexa Fluor 594 lgG antibody (Invitrogen) while Alexa Fluor 488 lgG antibody (Invitrogen) was used to probe EBs.
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7

Immunophenotyping of Hypoxic Neurospheres

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Newly formed neurospheres and differentiated cells after 48 h of hypoxia were fixed with 4% paraformaldehyde for 10 min at 4°C, washed with PBS and blocked with 10% normal serum for 20 min in PBS that contained 0.5% Triton X-100. The cells were incubated for 24 h at 4°C with primary antibodies against SOX-2 (1:100, MAB2018, R&D Systems, USA), OCT-4 (1:100, MAB1759, R&D Systems, USA), Nanog (1:100, Human: AF1997; Mouse: AF2729, R&D Systems, USA), KLF-4 (1:100, Human: AF3640; Mouse: AF3158, R&D Systems, USA), CD133 (1:150, MBS462020, MyBiosource, USA), CD15 (1:100, MAB2155, R&D Systems, USA), NESTIN (1:100, Human: MAB1259; Mouse: MAB2736, R&D Systems, USA), ABCG2 (1:100, ab130244, Abcam, USA), VEGF (1:100, MAB293, R&D Systems, USA) and HIF1α (1:100, MAB1536, R&D Systems, USA). Neurospheres and cells were washed three times with PBS for 5 min and then incubated at 37°C for 1 h with appropriate fluorophore-labeled secondary antibodies. Images were acquired with a laser scanning confocal microscope (LSM780, ZEISS, Germany).
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8

Hypoxia-Induced Stemness Marker Expression

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Cells cultured in hypoxia for 0, 12, 24, 48 and 72 h were collected, subjected to SDS-PAGE and transferred onto nitrocellulose membranes. The membranes were blocked with 5% non-fat milk and incubated with antibodies against SOX-2 (1:1000, MAB2018, R&D Systems, USA), OCT-4 (1:1000, MAB1759, R&D Systems, USA), Nanog (1:1000, Human: AF1997; Mouse: AF2729, R&D Systems, USA), KLF-4 (1:1000, Human: AF3640; Mouse: AF3158, R&D Systems, USA), CD133 (1:1000, MBS462020, MyBiosource, USA), CD15 (1:1000, MAB2155, R&D Systems, USA), NESTIN (1:1000, Human: MAB1259; Mouse: MAB2736, R&D Systems, USA), ABCG2 (1:1000, ab130244, Abcam, USA), VEGF (1:1000, MAB293, R&D Systems, USA) and HIF1α (1:1000, MAB1536, R&D Systems, USA). Enhanced chemiluminescence was conducted for visualization.
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