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7 protocols using urea

1

Reducing and Denaturing mAb Chains

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In order to obtain reduced and denatured mAbs chains, affinity purified trastuzumab at 5.75 mg/mL was buffer exchanged with a PD Desalting G-25 columns equilibrated with 0,584 M Tris-HCl (Roche, 10,708,976,001), and 5.37 mM EDTA (E6758, Sigma), pH 8.6 and then concentrated 5 fold using 30KDa Amicon tubes (Merck). Afterwards, 70 mM 2-mercaptoethanol (Bio-rad, 161–0710) and 8 M urea (Panreac, 141,754.1211) were added as described before [15 (link)]. The mixture was incubated for 1 h at 40 °C prior to the size-exclusion chromatography step.
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2

Photobacterium Luciferase Purification

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Lyophilized recombinant luciferase from Photobacterium leiognathi (99% purity) was purchased from Biolumdiagnostika Ltd. (Krasnoyarsk, Russia). Urea (Panreac, Germany), Na2HPO4 and KH2PO4 (AppliChem, Germany) were used without additional purification. All solutions were prepared using Na2HPO4/KH2PO4 buffer (0.05 M, pH 6.9). The concentration of Urea (0.25–8 M) was determined using a laboratory refractometer, IRF-454 B2M (Kazan Optical and Mechanical Plant, Russia).
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3

Preparation and Characterization of Deep Eutectic Solvents

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The following chemical compounds were used for DES preparation. As HBA, cholinium chloride ([Chol]Cl − 98% of purity) was purchased from Acros Organic®; tetramethylammonium chloride ([N1111]Cl − 97% of purity) and tetrabutylammonium chloride [N4444]Cl − 97% of purity) were purchased from Sigma-Aldrich. As HBD, ethylene glycol (99.5% of purity) was purchased from Sigma-Aldrich; 1-propanol (99.5% of purity) was purchased from Merck; butanoic acid (99% of purity) was purchased from Riedel de Haën; hexanoic acid (98% of purity) was purchased from SAFC; and urea (99% of purity) from Panreac. All DES were prepared at a molar ratio of 1:1, HBA:HBD. Briefly, HBDs and HBAs were added gravimetrically to closed vials and heated in a heat block with constant agitation. After the formation of a transparent liquid, the mixture was cooled down to room temperature. For some of these eutectic mixtures a known volume of water was added. The water content of both starting materials and DES was determined by Karl Fischer titration as detailed elsewhere42 (link) and considered in calculations regarding cytotoxicity benchmarks.
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4

Synthesis and characterization of nitrate-based compounds

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Phosphoric acid (85 wt% in H2O), urea (99%), glucose, (99%), sodium hydroxide, ethanol (99%) methanol, hexane, and chloroform were purchased from PANREAC, S.A.U. (Barcelona, Spain). Ethylenediaminetetraacetic acid (99%), calcium nitrate tetrahydrate (≥99%), sodium nitrate (≥99%), magnesium nitrate (98%), cobalt(ii) nitrate hexahydrate (98%), terbutryn, prometryn and simetryn were supplied from Sigma-Aldrich (Madrid, Spain). Ultrapure water was obtained through Millipore system for high purification.
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5

Ecotoxicological Evaluation of Deep Eutectic Solvents

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The following chemical compounds were used for DES preparation:
[Chol]Cl (98% purity) was purchased from Acros Organic ® , Geel, Belgium; ethylene glycol (99.5% purity) was purchased from Sigma Aldrich ® , St. Louis, Missouri, EUA; 1,2-propanediol from Panreac ® , Barcelona, Spain; propionic acid (99% purity) from Merck ® , Darmstadt, Germany; glycerol (99,8% purity) was purchased from Fischer Chemical ® , Hampton, New Hampshire, EUA; urea (99% purity) from Panreac ® , Barcelona, Spain; and 1-propanol (99.5% purity) was acquired from Merck ® , Darmstadt, Germany.
Each DES was prepared in the following molar ratios: 1:2, 1:1, 2:1 and 4:1 (HBD:HBA). Briefly, HBD and HBA were added gravimetrically to closed vials and heated with constant agitation. After the formation of a transparent liquid, the mixture was cooled down to room temperature to obtain each DES. Since the purpose of this study was the evaluation of the ecotoxicological character of DES, some of the stock eutectic mixtures were prepared by adding a known volume of water. The water content of the starting materials and of DES was determined by Karl Fischer titration and considered in the calculation of the toxicity (Table S1).
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6

Synthesis and Characterization of Reline

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Reline was prepared in a glovebox by mixing, in a 1:2 molar ratio, choline chloride (Acros Organics) and urea (Panreac) followed by heating at 60ºC. The reagents were previously dried under vacuum for three days to avoid water contamination, as it drastically affects Reline's properties 19 . Partially and fully deuterated mixtures were prepared in the same manner. urea-D4 (98 atom % D) was purchased from Sigma-Aldrich while [Ch]Cl-OD was prepared by repeatedly washing with D 2 O and drying under vaccum and heating. The success of isotopic exchange was confirmed by the appearance of the νOD band at 2400 cm -1 in the FTIR spectrum and the νOH/νOD intensity ratio suggests an exchange rate of 90%. Initially, three 1:2 mixtures were prepared: [Ch]ClOD+urea-H4 (total of 10 atom % D), [Ch]ClOH+urea-D4 (total of 87 atom % D) and [Ch]ClOD+urea-D4 (total of 97 atom % D). Weeks later, a fourth was made from blending equal amounts of the first two, resulting in a total of 48 % atom D.
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7

Antibiotic Synthesis and Characterization

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The IP antibiotics were utilised as their corresponding sodium salts: oxacillin (OXA) 95% (from Sigma-Aldrich), cloxacillin (CLX) 92.3% (from Syntopharma S.A) and dicloxacillin (DCX) 98.2% (from Research Pharmaceutical) (see chemical structures in Table 1). Glucose, peptone, yeast extract, monobasic potassium phosphate, zinc sulphate heptahydrate, tetraborate sodium decahydrate, ammonium molybdate, sodium acetate, malt extract, calcium chloride dehydrate and ammonium chloride were bought from Carlo Erba. Ammonium L-(+)-tartrate 98% and 2,6dimethoxyphenol 99% (DMP) was obtained from Alfa Aesar. Manganese sulphate heptahydrate, iron sulphate heptahydrate, potassium chloride, ammonium sulphate, sodium chloride, formic acid, tartaric acid, hydrogen peroxide, acetic acid, sodium sulphate, acetonitrile, methanol and Mueller-Hinton agar were bought from Merck.
2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulphonic acid) diammonium salt 98% (ABTS), veratryl alcohol 96%, 1-hydroxybenzotriazol (HBT), 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide > 98% (MTT), dimethyl sulfoxide (DMSO), Dulbecco's modified Eagle's medium (DMEM), ethylenediaminetetraacetic acid (EDTA) and doxorubicin were obtained from Sigma -Aldrich. Fetal bovine serum (FBS) was purchased from Invitrogen. Urea was bought from Panreac.
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