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Ibright cl1000 gel documentation system

Manufactured by Thermo Fisher Scientific
Sourced in United States, India

The IBright CL1000 is a gel documentation system designed for imaging and analyzing DNA, RNA, and protein samples separated by gel electrophoresis. The system captures high-quality images of gels and blots using a sensitive CCD camera and advanced imaging software.

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5 protocols using ibright cl1000 gel documentation system

1

SDS-PAGE Analysis of Antivenoms

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Antivenoms (8 μg) were separated on a 15% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions, then stained with Coomassie Brilliant Blue R-250 (Sisco Research Laboratories Pvt. Ltd., Mumbai, India) and visualized using an iBright CL1000 gel documentation system (Thermo Fisher Scientific, USA).
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2

Protein Separation and Identification of Snake Venoms

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Venoms of African elapid (10 µg) and viperid (12 µg) snakes were subjected to reducing SDS-PAGE in a Mini Gel tank from Bio-Rad (Mini-PROTEAN Tetra Vertical Electrophoresis cell). The gels were stained with Coomassie Brilliant Blue R250 (Sisco Research Laboratories Pvt. Ltd., (Mumbai, Maharashtra, India) and visualised in an iBright CL1000 gel documentation system (Thermo Scientific: Waltham, MA, USA). A prestained marker from Bio-Rad (Precision Plus Protein™ Dual Color standards: Hercules, CA, USA) was used as a reference to determine the approximate molecular mass of proteins [22 (link)].
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3

SDS-PAGE Analysis of Venom Proteins

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N. sagittifera and N. naja venoms were subjected to reducing SDS-PAGE to evaluate the qualitative and quantitative differences in venoms. Briefly, venom samples (12 µg) were loaded into 12.5% gel, followed by an electrophoretic separation in Tris-Glycine-SDS buffer at 80 V (Smith, 1984 (link)). The Precision Plus Protein Dual Color Xtra Standard (Bio-Rad Laboratories, United States) was used as a marker, and the gel was stained with Coomassie Brilliant Blue R-250 (Sisco Research Laboratories Pvt. Ltd., India). iBright CL1000 gel documentation system (Thermo Fisher Scientific, United States) was then used for visualising the gel.
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4

Venom DNase Activity Assay Protocol

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0.05 µg/µl of crude venom in 1X phosphate buffered saline (PBS) was mixed with purified calf thymus DNA (Sigma-Aldrich, United States) and incubated at 37°C for 60 min to assess the DNase activity of N. sagittifera and N. naja venoms (Gerceker et al., 2009 (link); Senji Laxme R. R. et al., 2021 (link)). Post-incubation, these reaction mixtures were subjected to 0.8% agarose gel electrophoresis. GelRed (Sigma-Aldrich, United States) nucleic acid stain was used to visualise DNA in an iBright CL1000 gel documentation system (Thermo Fisher Scientific, United States). The percentage DNase activity of the venom samples, and that of the positive control, was calculated by densitometric analysis of the images using the ImageJ software (Schneider et al., 2012 (link))
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5

Analyzing Fibrinogenolytic Activity of Snake Venoms

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The fibrinogenolytic activity of N. sagittifera and N. naja venoms was elucidated using an electrophoresis-based protocol (Teng et al., 1985 (link)). A predefined concentration of venom (1.5 µg) based on protein content was incubated with human fibrinogen (15 µg) (Sigma-Aldrich, United States) in 1X PBS (pH 7.4) at 37°C for 60 min. An equal volume of the loading dye solution (1 M Tris-HCl, pH 6.8; 50% Glycerol; 0.5% Bromophenol blue; 10% SDS; and 20% β-mercaptoethanol) was added to the reaction mixture, and the resulting mixture was then heated at 70°C for 10 min. Samples were subjected to 15% SDS-PAGE, and the gel was subsequently stained with Coomassie Brilliant Blue R-250. An iBright CL1000 gel documentation system (Thermo Fisher Scientific, United States) was used to visualise the stained gels. A negative control containing human fibrinogen alone was used to compare and interpret the results.
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