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7 protocols using anti lamp2

1

Western Blot Analysis of Liver Proteins

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Whole protein lysates from the mouse liver, serum, and Hepa-1c1c7 cells were extracted using lysis buffer supplemented with protease and phosphatase inhibitors (Sigma-Aldrich). Aliquots containing 30 μg of proteins were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transblotted onto polyvinylidene difluoride membranes (Bio-Rad, Hercules, CA), blocked with 4% nonfat dry milk in phosphate-buffered saline solution containing 1% Tween-20, and then incubated overnight with the following antibodies, including anti-DGAT1, anti-ApoB100 (Santa Cruz Biotechnology, Dallas, TX), anti-ACSL1, anti-LAMP1, anti-LAMP2, anti-ATF4, anti-CHOP (Cell Signaling Technology, Danvers, MA), anti-ACADL, anti-ACOX1 (Proteintech Group, Inc, Rosemont, IL), anti-ACADM, anti-LC3II (Novus Biologicals, Littleton, CO), anti-β-actin, and anti-GAPDH (Abcam, Cambridge, MA), respectively. Membranes were then washed and incubated with horseradish peroxidase-conjugated goat anti-mouse immunoglobulin G or goat anti-rabbit immunoglobulin G (Thermo Fisher Scientific, Rockford, IL). The bound complexes were detected with enhanced chemiluminescence (Thermo Fisher Scientific) and quantified by densitometry analysis.
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2

Lysosome Visualization in A2780 Cells

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A2780 cells in a chamber slide treated with quinacrine (15 μM, 4 h) were fixed with 4% formaldehyde solution in PBS buffer (pH 7.4) for 10 min in room temperature, then blocked in 3% bovine serum albumin in PBS for 30 min. Anti-Lamp2 (Cell Signaling Technology, Danvers, MA) was added and incubated for 1 h. Goat anti-rabbit IgG AlexaFluor-568 (Invitrogen, Carlsbad, CA) was used as secondary antibody. Nucleus was counterstained with DAPI (Vector Laboratories Burlingame, CA). Images were captured with a ZEISS LSM 880 confocal laser scanning microscope (White Plains, NY).
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3

Analyzing Neurodegenerative Disease Mechanisms

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Spermidine, ouabain, SCH28080, FITC-dextran, retinoic acid, brain-derived neurotrophic factor (BDNF), and anti-β-actin antibody (AC-74) were obtained from Sigma-Aldrich. Thapsigargin was from Cayman Chemical. Anti-Xpress-tag antibody and lipofectamine 3000 were from Thermo Fisher Scientific. Anti-Na+,K+-ATPase α1-isoform antibody (C464.6) was from Santa Cruz Technology. Anti-phosphorylated α-synuclein antibody (pSyn#64), bafilomycin A1, omeprazole, valinomycin, and G-418 were from Fujifilm Wako. Anti-ATP13A2, anti-Lamp2, anti-calnexin, and anti-clathrin heavy chain antibodies were from Cell Signaling Technology. Anti-H+,K+-ATPase α-subunit (1H9) and β-subunit (2B6) antibodies were from Medical & Biological Laboratories. Horse-radish peroxidase-conjugated anti-mouse and rabbit IgGs were from Millipore. Anti-pan-α-synuclein antibody (MJFR1) was from Abcam. Alexa Fluor 568- and 488-conjugated IgG antibodies were from Abcam. 4’,6-Diamidino-2-phenylindole (DAPI) was from Dojindo Laboratories. Saponin was from Nakarai Chemicals. Fetal bovine serum (FBS) was from Nichirei bioscience. Western Lightning ECL Pro and [γ-32P] ATP were from PerkinElmer. 86RbCl was from Polatom. All other reagents were of molecular biology grade or the highest grade of purity available.
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4

Immunoblotting Analysis of Mitochondrial Proteins

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Extracts for immunoblotting were acquired from N2a cells homogenized in RIPA buffer (radioimmunoprecipitation assay buffer, Thermo Fisher Scientific, Catalog Numbers 89900). Briefly, proteins were separated by electrophoresis and subsequently transferred to the PVDF membrane by electroblotting using standard protocols. The primary antibodies used were anti-LC3II (Cell Signaling Technology, catalog #2775s), anti-COX IV (Proteintech, catalog no. 11242–1-AP), anti-TOM40 (Proteintech, catalog no. 18409–1-AP), anti-MnSOD (Proteintech, catalog no. 24127–1-AP), anti-CLS (Proteintech, catalog no.14845–1-AP), anti-PLS3 (Proteintech, catalog no.28028–1-AP), anti-NDPK-D (Bioss, bs-11902R), anti-PINK1 (Novus Biologicals, catalog no. BC100–494), anti-Parkin (Abcam, catalog no. ab77924), anti-Drp1 (Cell Signaling Technology, catalog #8570), anti-Lamp2 (Cell Signaling Technology, catalog #49067), PGC1a monoclonal antibody (Proteintech, catalog no. 66369–1-Ig), recombinant anti-mtTFA antibody (Abcam, ab252432), GAPDH monoclonal antibody (Proteintech, catalog no. 60004–1-Ig), and anti-Tubulin (Proteintech, catalog no. 11224–1-AP).
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5

Western Blot Analysis of Liver Proteins

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Protein lysates were extracted from mouse liver, Hepa-1c1c7 cells, and donor liver with lysis buffer containing protease and phosphatase inhibitors at recommended concentration (Sigma-Aldrich). Aliquots containing 30 μg of proteins were loaded to sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) and transferred onto polyvinylidene difluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA). After transfer, membranes were blocked with 4% milk and incubated at 4 °C overnight with the following antibodies: anti-S6, anti-p-S6 (Ser235/236), anti-LAMP1, anti-LAMP2, anti-ATF4, anti-CHOP (Cell Signaling Technology, Denver, MA, USA), anti-LC3II (Novus Biologicals, Littleton, CO, USA), anti-β-actin, and anti-GAPDH (Abcam, Cambridge, MA, USA), respectively. Membranes were subsequently washed and incubated with horseradish peroxidase-conjugated secondary goat anti-mouse IgG or goat anti-rabbit IgG (Thermo Scientific, Rockford, IL, USA). The bound protein complexes were detected with enhanced chemiluminescence (Thermo Fisher Scientific, USA) and quantified by Image J (NIH, Bethesda, MD, USA).
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6

Molecular Mechanisms of Mitophagy in HK-2 Cells

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HK‐2 cells (Human, kidney proximal tubular 2) were obtained from ATCC (ATCC® CRL‐2190™). The primary antibodies used in this study include anti‐PARKIN (Cat no: #2132, 1:500; Cell Signaling Technology), anti‐p‐PARKIN (Cat no: orb312554, 1:250, Biorbyt), anti‐PINK1 (Cat no: #6946, 1:500; Cell Signaling Technology), anti‐BNIP3L (Cat no: GTX111876, 1:1000, GeneTex), anti‐BNIP3 (Cat no: GTX10433, 1:1000, GeneTex), anti‐HuR (Cat no: #12582, 1:1000, Cell Signaling Technology), anti‐TOMM20 (Cat no: ab56783, 1:200, Abcam), anti‐LC3 (Cat no: NB100‐2220, 1:200, Novus Biologicals), anti‐COXIV (Cat no: 4850, 1:1000, Cell Signaling Technology), anti‐LAMP2 (Cat no: 49067, 1:200, Cell Signaling Technology), and anti‐β‐ACTIN (Cat no: A1978, 1:1000, Sigma‐Aldrich). Secondary antibodies‐rabbit/mouse IgG HRP, Alexa Fluor 546 anti‐mouse IgG (H + L), Alexa Fluor 488 anti‐goat IgG (H + L), Alexa Fluor 647 anti‐rabbit IgG (H + L) were purchased from Invitrogen™. 2′,7′‐dichlorofluorescin‐diacetate (DCFH2‐DA), JC‐1 and DAPI (4′,6‐diamidino‐2‐phenylindole) mount were purchased from Sigma Aldrich. Magna RIP™ RNA‐Binding Protein Immunoprecipitation Kit was procured from Sigma‐Aldrich. The SuperSignal West Femto Maximum Sensitivity Substrate detection reagents were purchased from Thermo Scientific Inc.
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7

Molecular Mechanisms of Sirt6 and KLF4

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Streptozotocin (STZ) was purchased from SigmaeAldrich (St Louis, MO, U.S.A.); the anti-LC3 II, anti-LAMP2, anti-P62, anti-Beclin-1, anti-Sirt6, anti-KLF4 and anti-GAPDH antibodies, and secondary antibodies were obtained from Cell Signaling (Denver, U.S.A.). Adenovirus-Sirt6 (1.99 Â 10 10 PFU/ml), Lentivirus-Sirt6 (2 Â 10 ^8 TU/ml), Adenovirus-KLF4 (2 Â 10 10 PFU/ml) and Lentivirus-KLF4 (3 Â 10 ^8 TU/ml) were made by Hanbio (Shanghai, China). Pierce IP Lysis Buffer was from Thermo Fisher Scientific Inc. (Massachusetts, U.S.A.)
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