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22 protocols using alexa fluor 488 rabbit anti mouse igg

1

Immunofluorescence Analysis of Malaria Gametocytes

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Fixed, permeabilized P. falciparum gametocytes, gametes, zygotes and ookinetes were analysed by IFA. Parasites were fixed on glass slides with 100 % acetone at −20 °C for at least 20 min and then rehydrated by two changes of PBS for 5 min each at room temperature. For membrane permeabilization and blocking of nonspecific binding, fixed cells were incubated in PBS supplemented with 3 % bovine serum albumin and 0.1 % Triton X-100 for 1 h at room temperature. The preparations were then incubated with mAb (1:1000 dilution) for 1 h at room temperature followed by either FITC-conjugated anti-mouse IgG or Alexa Fluor 488 rabbit anti-mouse IgG (1:200 dilution) (Molecular Probes, Invitrogen, USA). Nuclei were visualized with 300 nM DAPI (4, 6-diamidino-2-phenylindole) (Pierce Biotechnology, Rockford, IL, USA). Slides were washed an additional six times in Tris-buffered saline (TBS) for a total of 30 min then mounted with coverslips using Dako mounting medium (Dako, Carpinteria, USA). Preparations were examined by deconvolution microscopy using an Olympus BX51 fluorescence microscope and Olympus DP71 camera (Olympus, Center Valley, CA, USA).
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2

Immunofluorescence Staining of Hemocytes

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Hemocytes were allowed to adhere (90 min, RT) to micro cover glasses (Matsunami, Osaka, Japan) in 6-well plates (BM Equipment, Tokyo, Japan). After removing the ASW, hemocytes were blocked (30 min, RT) with Ca2+/Mg2+-free ASW (CMFASW) containing 1% BSA; the composition of CMFASW was 480 mM NaCl, 9.4 mM KCl, 32 mM Na2SO4, 3.2 mM NaHCO3, 10 mM EPPS, pH 8.0. The primary antibody (mAb11B16B10) and secondary antibody (Alexa Fluor 488 rabbit anti-mouse IgG; Molecular Probes, Thermo Fisher Scientific, Waltham, MA) were diluted to 1 and 0.4 μg/mL, respectively, in 2 mL of CMFASW containing 1% BSA, and added sequentially to each well and incubated (30 min, RT); the hemocytes were washed five times with CMFASW containing 1% BSA between incubations, and three times with ASW after incubation with the secondary antibody, and then examined under a fluorescence microscope (AXIO Imager M1; Zeiss, Oberkochen, Germany).
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3

Embryonic Cell Proliferation and Apoptosis Analysis

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Embryos were fixed overnight in 4% PFA and washed with PBT0.2 (1X PBS with 0.2% Triton X-100). Blocking was completed for 30 minutes at RT in solution of PBT0.2 with 2% goat serum. Proliferating cells were labeled with rabbit anti-phosphohistone-H3 (H3P, Millipore, Billerica, MA) primary antibody at 1∶250 and incubated overnight. Embryos were rinsed thoroughly with PBT0.2 and then incubated for 2 hours at RT with secondary antibody Alexa Fluor 488 rabbit anti-mouse IgG (Molecular Probes, Grand Island, NY) at 1∶400 for visualization by fluorescence microscopy. The same procedure was used to analyze optic nerve with zn-5 primary antibody to label axons. Mouse-conjugated zn-5 (ZIRC 021009) was diluted at 1∶200 and embryos were incubated overnight. Alexa Fluor 488 goat anti-mouse IgG (Molecular Probes, Grand Island, NY) at 1∶400 was used as secondary antibody. Apoptotic cells were labeled with rabbit anti- active- caspase3 antibody (BD Pharmingen), and Alexa Fluor 568 (Molecular Probes, Grand Island, NY) goat anti-mouse IgG was used as secondary antibody
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4

Immunohistochemical Detection of p53 in Zebrafish

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Whole mount immunohistochemistry of p53 in zebrafish embryos was carried out as previously described.20 (link) AlexaFluor 488 Rabbit Anti-Mouse IgG (Molecular Probes, Life Technologies, Carlsbad, CA, USA) was used for the secondary antibody and the embryos were imaged using Zeiss LSM510 confocal microscope (Carl Zeiss AG, Oberkochen, Germany).
Adult zebrafish were fixed in Dietrich's fixative before embedding in paraffin, at the Advanced Molecular Pathology Laboratory, IMCB, A*STAR, Singapore. The paraffin blocks were processed and previously described by Guo et al.20 (link) ZFp53-5.1 hybridoma supernatant16 (link) was used neat for the primary antibody and the peroxidase-labeled Goat Anti-Mouse Ig (Dako, Carpinteria, CA, USA) was diluted 1:2 and used as the secondary antibody. Antibody staining was performed as described by Lee et al.16 (link) The slides were imaged on the Zeiss AxioImager Z1 microscope and analyzed with AxioVision 4.8 software (Carl Zeiss AG).
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5

Immunohistochemical Analysis of P2X Receptor

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Anesthetized rats were perfused intracardially with phosphate buffered saline (PBS; pH 7.4) for 10 min, followed by buffered paraformaldehyde (PFA 4%, Sigma) for 10 min. The nodose ganglia was visually identi ed and harvested from the rats and post xed by immersion in buffered PFA 4% for 12 h at 4°C followed by three 5 min washes in PBS, sucrose gradient (5%, 10%, 20%, 30% in PBS), and then embedded in optimum cutting media. Cryostat sections (20 µm) of the nodose ganglia were obtained and mounted on Superfrost Plus slides (Thermo Fisher Scienti c). Sections were blocked/permeabilized in 0.5% Triton X-100, 2% sh skin gelatin (Sigma-Aldrich), 1% bovine serum albumin in PBS for 1 h at room temperature. Sections were incubated overnight at 4°C with a mouse anti-P2X monoclonal antibody (1:100 in the same blocking media, Millipore). After being washed with PBS, tissue sections were incubated for 1 h at room temperature with an Alexa-Fluor 488 rabbit anti mouse IgG (1:200, Molecular Probes) antibody. Finally, sections were mounted in DAPI-containing media (Vectashield, Vector Laboratory) and visualized using a confocal laser microscope (Leica).
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6

Engineered Hyaluronic Acid-Based Biomaterials

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Unless otherwise stated, chemicals were used without further purification. Poly-L-lysine hydrobromide (PLL; Mw 30–70 kDa), N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC) ≥ 98.0% and N-hydroxysuccinimide (NHS) were obtained from Sigma-Aldrich. Hyaluronic acid (HA; Mw 6.4 kDa, 752 kDa and 1500 kDa) was purchased from Lifecore. We used Anti-CD44 antibody [KM201] (ab25340) and Mouse IgG1 Kappa [MOPC-21]-Isotype 1 (ab18443) from Abcam for the CD44 blocking. Recombinant Human CD44 His tag protein was purchased from Biorbyt. Phalloidin–tetramethylrhodamine B isothiocyanate (phalloidin–TRITC), 4,6-diamidino-2-phenyindole, dilactate (DAPI) from Sigma-Aldrich and the monoclonal antibody to CD44 from Acris-Antibodies were used for immunostaining. The secondary antibody, Alexa Fluor 488 Rabbit Anti-Mouse IgG, was obtained from Invitrogen. The primary antibody Cortactin (H-191), sc-11408, was obtained from Santa Cruz Biotechnology.
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7

Influenza A Virus Molecular Analysis

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HEK-293T, MDCK, and human cervical HeLa cells were maintained in Dulbecco’s Modified Eagle’s Medium (DMEM; Gibco) supplemented with 10% fetal bovine serum (FBS; Gibco) at 37°C/5% CO2. Infectious wild-type and NES mutant viruses (produced by reverse genetics, as described below) were derived from influenza A/WSN/33. A polyclonal antibody (Ab) against influenza A/WSN/33 virus proteins (anti-WSN Ab: a kind gift from Dr. Kazufumi Shimizu, Nihon University School of Medicine) was used for Western blot analysis together with horseradish-peroxidase (HRP)-conjugated goat anti-rabbit IgG (Amersham Bioscience). Monoclonal antibodies (MAbs) against M1 (Santa Cruz), NS1 (Santa Cruz), CRM1 (BD Biosciences), and β-actin (Sigma), and an HRP-conjugated goat anti-mouse IgG (Amersham Bioscience), were also used. Anti-NS1 MAb (Santa Cruz), anti-NS2 Ab (GeneTex), anti-NP MAb (Santa Cruz), anti-M1 MAb (Abcam), Alexa Fluor 488 rabbit anti-mouse IgG (Invitrogen), and Alexa Fluor 488 goat anti-rabbit IgG (Invitrogen) were used for immunofluorescence staining.
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8

Quantification of p21-Positive Cells in Dentate Gyrus

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The frozen brains were fixed with 30% sucrose in 0.5% paraformaldehyde solution overnight before serially sectioning into 40 μm along the coronal plane to get the whole dentate gyrus (bregma point -2.3 to -6.3 mm) [42 ] using a cryostat (Cryostat Series HM550 Microm international, A.S. Science Co., Ltd., Walldorf, Germany) and collected into 24-well plates containing the cryoprotective buffer. Sections were incubated in blocking buffer (20% normal goat serum (Abcam, Cambridge, UK) in PBS containing 0.5% Triton X-100) for 1 h and incubated with an anti-p21 (1 : 100, Santa Cruz Biotechnology, TX, USA) at 4°C overnight. The next day, sections were washed with buffer (PBS containing 0.3% Triton X-100), followed by incubating with an Alexa Fluor 488 rabbit anti-mouse IgG (1 : 300, Invitrogen, San Diego, CA, USA) for 1 h, and were labeled with propidium iodide (PI) (1 : 6000, Sigma-Aldrich, St. Louis, MO, USA). Nine sections from every 8th brain section of the entire length of the dentate gyrus were selected from each rat for staining [43 (link)]. The p21-positive cells within the three cells of the internal rim of the dentate gyrus were scored, and a total positive cell count of nine sections from each rat were multiplied by 8 for quantification. Fluorescence images were taken at 10× and 40× magnifications using a fluorescence microscope (Nikon ECLIPSE 80i, Melville, NY, USA).
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9

Lentiviral Transduction and Immunofluorescence Imaging

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U-937 cells were seeded in ibiTreat µ-Slide 8 Well chambers slide (Ibidi; Germany, Cat#80826) (200 000 cells/well) after being subjected to lentiviral transductions. Cells were fixed with 4% (w/v) paraformaldehyde (Thermo Fisher Scientific; Cat#28906), permeabilized with Triton X-100 0.2% (Sigma-Aldrich; Cat#X100), and incubated with anti-FLAG mouse monoclonal primary antibody (1:500; Merck; Cat#F1804) and Alexa Fluor 488 rabbit-anti-mouse IgG (1:1000; Invitrogen; Cat# A27023) secondary antibody. Cells were washed with PBS between steps and incubated with DAPI (5 min; 1:5000; Invitrogen; D1306) before mounting with ibidi mounting medium (Ibidi; Cat#50001). Fluorescence images were acquired using a Leica-SP8 confocal microscope with a HC PL APO CS2 40/1.10 water objective and analysed using the Bitplane Imaris software (Imaris, Zurich, Switzerland).
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10

Immunofluorescence Staining of Lamin A/C

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On Day 3 of culture, the cells on chambered glasses were fixed for 10 min with 10% formalin (Sigma, St. Louis, MO, USA) and washed three times with phosphate buffered saline (PBS; Sigma, St. Louis, MO, USA). The cells were permeabilized by 0.1% Triton X-100 for 5 min and washed with PBS three times. To prevent nonspecific binding of the antibody, 1% bovine serum albumin (BSA; MP biomedicals, Singapore) was treated for 30 min at room temperature. Then the cells were treated with the Lamin A/C antibody (Santa Cruz Biotehcnology, Dallas, TX, USA) diluted in the ratio of 1:100 in 1% BSA at room temperature for 1 h. After washing three times with PBS, the secondary antibody was treated at room temperature for 1 h. As a secondary antibody, Alexa Fluor 488 rabbit anti-mouse IgG (invitrogen, USA) diluted in the ratio of 1:500 in 1% BSA was used. After washing with PBS, the cell nuclei were stained for 7 min using Hoechst 33258 (Thermo Fisher, Waltham, MA, USA). Confocal microscopy (Carl zeiss, Jena, Germany) was used to confirm fluorescent signals of Lamin A/C and cell nuclei with ×40 magnification.
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