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N n disuccinimidyl carbonate dsc

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N,N′-disuccinimidyl carbonate (DSC) is a chemical compound commonly used as a reagent in organic synthesis. It is a highly reactive, N-hydroxysuccinimide (NHS)-based compound that can participate in coupling reactions, particularly for the activation of carboxylic acids. DSC is employed to facilitate the formation of stable amide bonds between amino groups and activated carboxylic acid moieties.

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3 protocols using n n disuccinimidyl carbonate dsc

1

Synthesis of Boron-containing Fluorescent Probes

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3’-PT-Amino-Modifier C6 CPG, 5′,N-protected 2′-O-TBDMS-ribo- (A and G), 5′,N-protected 2’-deoxyribophosphoramidites, Spacer Phosphoramidite 18, and 3’-PT-Amino-Modifier C6 polymer support were purchased from Glen Research Inc (Sterling, VA, USA). 5′,N-Protected 2’-deoxy-2’-fluoro pyrimidine phosphoramidites were purchased from ChemGene Corp (Wilmington, MA, USA). N,N-Diisopropylethylamine (DIPEA), and propargylamine were purchased from Sigma-Aldrich (St. Louis, MO, USA), N,N′-disuccinimidyl carbonate (DSC) was purchased from Acros Organics (Geel, Belgium), Sulfo-Cyanine 5 NHS ester, 10 mM Cu(II)-Tris(benzyltriazolylmethyl)amine (Cu(II)-TBTA) stock in 55% dimethyl sulfoxide (DMSO), ascorbic acid were purchased from Lumiprobe (Russia), and sodium dodecaborate Na2[B12H12] was from AviaBor (Dzerzhinsk, Russia). 10B-enriched (>99%) BPA) was purchased from Katchem spol. s r. o. (Czech Republic), and converted into fructose 1:1 complex for increasing solubility [29 (link)]. All solvents (tetrahydrofuran, DMSO, CH3CN (various vendors)) were dried by 3 Å molecular sieves or by distillation and stored over CaH2. Bis-tetrabutylammonium-(4-azidobuthoxy)-undecahydro-closo-dodecaborate (closoB12-azide) was synthesized as described in [22 (link)] and kindly provided by Dr. V.N. Silnikov (ICBFM SB RAS).
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2

Synthesis of Diverse Oligonucleotide Building Blocks

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A controlled pore glass support (CPG) derivatized with 2′-O-TBDMS-C, 2′-O-TBDMS-U, 2′-O-methyl-C, 2′-O-methyl-U,deoxycytosine (dC) or deoxythymidine (dT), 5′,N-protected 2′-O-methylribo- (A, C, G or U), 2′-O-TBDMS-ribo (A, C, G or U) and deoxyribo (dA, dC, dG or dT), phosphoramidites, and 3′-alkyne-Modifier Serinol CPG were purchased from Glen Research Inc. (Sterling, VA, USA), and 5′,N-protected 2′-deoxy-2′-fluoro purine phosphoramidites and CPG were purchased from ChemGene Corp (Wilmington, MA, USA). N,N-Diisopropylethylamine (DIPEA) and propargylamine were purchased from Sigma-Aldrich (St. Louis, MO, USA), N,N′-disuccinimidyl carbonate (DSC) was purchased from Acros Organics (Geel, Belgium), 10 mM Cu(II)-TBTA Stock in 55% dimethylsulfoxide (DMSO) and ascorbic acid were purchased from Lumiprobe (Russia), and sodium dodecaborate Na2[B12H12] was purchased from AviaBor (Dzerzhinsk, Russia). All solvents (tetrahydrofuran (THF), DMSO, CH3CN (various vendors)) were dried with 3 Å molecular sieves or by distillation and stored over CaH2. Kieselgel F254 thin-layer chromatography plates were purchased from Merck (Kenilworth, NJ, USA).
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3

Synthesis and Functionalization of Oligonucleotides

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The 5′,N-protected 2′-O-TBDMS-ribo- (A and G), Spacer Phosphoramidite 18, 3′-alkyne-Modifier Serinol polymer support and 3′-PT-Amino-Modifier C6 polymer support were purchased from Glen Research Inc (Sterling, VA, USA). The 5′,N-protected 2′-deoxy-2′-fluoro pyrimidine phosphoramidites and CPG supports were purchased from ChemGene Corp (Wilmington, MA, USA). The N,N-diisopropylethylamine (DIPEA) and propargylamine were purchased from Sigma-Aldrich (St. Louis, MO, USA). The N,N′-disuccinimidyl carbonate (DSC) was purchased from Acros Organics (Geel, Belgium). The Sulfo-Cyanine 5 NHS ester, 10 mM Cu(II)-TBTA stock in 55% DMSO and ascorbic acid were purchased from Lumiprobe (Moscow, Russia), and the sodium dodecaborate Na2[B12H12] was from AviaBor (Dzerzhinsk, Russia). The 10B-enriched (>99%, BPA) was purchased from Katchem spol. s r. o. (Prague, Czech Republic) and converted into fructose 1:1 complex for increased solubility [29 (link)]. All solvents (THF, DMSO, CH3CN (various vendors)) were dried using 3 Å molecular sieves or by distillation and stored over CaH2. Bis-tetrabutylammonium-(4-azidobuthoxy)-undecahydro-closo-dodecaborate (closoB12-azide) was synthesized as described in [23 (link)] and kindly provided by Dr. V.N. Silnikov (ICBFM SB RAS).
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