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3 protocols using sars cov 2 s2 protein

1

SARS-CoV-2 S1 and S2 Protein ELISA

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ELISA protocol generally followed that of precious study.18 (link) Briefly, costar 96-well clear plates (Costar, 42592) were coated with 500 ng/mL SARS-CoV-2 S1 protein (Sino Biological, 40591-V08H) or SARS-CoV-2 S2 protein (Sino Biological, 40590-V08B) overnight at 4 °C. The next day, plates were blocked with 100 μL blocking buffer (5% FBS and 0.1% Tween 20 in PBS) at room temperature for 2 h. After washing with PBST buffer (0.1% Tween 20 in PBS), 1:100 diluted serum was then added to the plates and incubated for 1 h at room temperature. Serum was diluted in blocking buffer. Serum was heat inactivated at 56 °C for 30 min before added to the plate. Then, these plates were washed 5 times with 0.05% PBS-Tween 20. Then these ELISA plates were incubated with anti-human IgG HRP antibody (Bioss Biotech, 0297D) at room temperature for 1 h. Anti-human IgG antibody was used at a 1:3000 dilution. Then, these plates were washed 5 times with 0.05% PBS-Tween 20 and 100 μL TMB buffer (Beyotime, P0209) was added and reacted for 15 min at room temperature. These reactions were stopped with 1 M H2SO4 stopping buffer. Plates were read on a Beckman Coulter Plate Reader at 450 nm, and ODs were background subtracted.
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2

Luminex-based SARS-CoV-2 Variant Antigen Assay

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Antigens used for Luminex based assays included SARS-CoV-2 D614G spike protein (kindly provided by Erica Saphire, La Jolla Institute for Immunology), SARS-CoV-2 S1 protein (Sino Biological), SARS-CoV-2 S2 protein (Sino Biological), and SARS-CoV-2 RBD (kindly provided by Aaron Schmidt, Ragon Institute), as well as antigens from SARS-CoV-2 VOCs, such as Alpha (B.1.1.7) spike protein (LakePharma), Beta (B.1.351) spike protein (LakePharma), Gamma P1 spike protein (LakePharma), Kappa B.1.617.1 spike protein (Sino Biological) and Delta B.1.617.2 spike protein (kindly provided by Erica Saphire, La Jolla Institute for Immunology). Alpha (B.1.1.7), Beta (B.1.351), Gamma P1, Kappa (B.1.617.1) and Delta (B.1.617.2) RBDs were kindly provided by Florian Krammer, Icahn School of Medicine at Mount Sinai.
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3

SARS-CoV-2 S2 Protein ELISA Screening

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Enzyme-linked immunosorbent assay (ELISA) was employed to screening for the specific binding phage-scFv clones. Briefly, 96-well ELISA plates (Corning, 42,592) were coated with SARS-CoV-2 S2 protein (Sino Biological, 40,590-V08B) and incubated at 4°C overnight, then plates were blocked with 1% bovine serum albumin (BSA) (Sangon, A600332–0100)/PBS (Gibco, 10,010–023) at 37°C for 2 hours (300 μL/well) and washed with PBST for five times. 50 μL supernatant from the single clone antibodies pool and 50 μL 1% BSA/PBS were added into each sample well and incubated at 37°C for 1 hour, blank control wells were supplemented with 1% BSA/PBS at the same time (100 μL/well). After five washes with PBST, a 1:3000 dilution of Horseradish peroxidase (HRP) conjugated anti-human Fab (Sigma, A0293) was added and incubated at 37°C for 1 hour (100 μL/well). Following five washes with PBST, 3,3',5,5'-Tetramethylbenzidine substrate (Thermo Scientific, 34,029) was added (100 μL/well) and incubated at room temperature for 10 min, finally 50 μL 2 M H2SO4 was added to each well to stop the reaction. Results were monitored at 450 nm, the cut-off value was set as the mean of the blank controls +2 standard deviation. The well with OD 450 value > cut off value was considered as positive well, thus phage-scFv against S2 was separated.
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