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2 protocols using ehmt2 g9a

1

Profiling Epigenetic Regulators and Signaling

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Whole-cell lysates were prepared from snap frozen cell pellets using RIPA lysis buffer with Complete Mini Protease inhibitors and Phosphatase inhibitors (Roche). Nuclear and Cytoplasmic extracts were prepared from cell pellet or tissue sample using NE-PER™ Nuclear and Cytoplasmic Extraction Kit (Thermo Scientific). Equal amount of the whole cell lysates or nuclear/cytosolic extracts were loaded and separated by SDS–PAGE and transferred to PVDF membrane (Bio-Rad, Hercules, CA, USA), followed by immunoblotting analysis with antibodies to EHMT2/G9a (abcam, ab185050), Di-Methyl-Histone H3 (cell signaling, #4658), Histone H3K9me1 (santa cruz, #39681), Histone H3 (cell signaling, #4499), Tri-Methyl-Histone H3 (cell signaling, #4909), β-actin (Sigma, A2228), phospho-RelB (cell signaling, #5025), RelB (cell signaling, #10544), Bim (cell signaling, #5392), NF-κB2 (cell signaling, #3017), HDAC4 (cell signaling, #5392), HRP-conjugated anti-Rabbit (Cell Signaling #7074), and HRP-conjugated anti-Mouse (Cell Signaling #7076). All primary antibodies were used at 1:2000 dilution and secondary antibody used at 1:10,000 dilution. The blots were developed using ChemiDoc™ MP Imaging System (Bio-rad).
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2

Chromatin Immunoprecipitation Protocol for Epigenetic Modifications

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Chromatin immunoprecipitation (ChIP) was conducted essentially as previously described with the following antibodies: Abcam H3K9me3 (ab8898), Millipore HP1γ (05–690), Millipore H3K4me3 (05–745R), and Abcam EHMT2/G9a (ab40542).25 Samples were analyzed using the comparative △△Ct method and normalized against an intergenic control region or normalized to a housekeeping gene, intracisternal A-type particles (IAPs) (Suppl. Table S2).23 (link),28 (link) Experiments were performed in a minimum biological triplicate and data are representative of sample averages. t tests were used to determine significant p values.
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