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5 protocols using phosphorylated p65 p p65

1

Automated Capillary-based Immunoassay of Signaling Proteins

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Cells were lysed by using RIPA Lysis buffer (Sigma Aldrich) containing Protease Inhibitor Cocktail (1 mL/10 mL lysates, Sigma Aldrich) and PhosSTOP™ (1 tablet per 10 mL lysate, Roche). The lysates were incubated for 20 min at 4°C with shaking, followed by centrifuged (130000g, 10 min, 4°C) and the supernatant was used for automated capillary-based immunoassay on a Wes Simple Western System (ProteinSimple, Bio-Techne, Minneapolis, USA). Primary antibodies were used as followed Actin-β (dilution 1:100; catalog no. A5441, Sigma Aldrich), p65 (1:50; 8242, Cell Signaling Technology, Danvers, MA, USA), phosphorylated-p65 (p-p65) (1:50; 3033, Cell Signaling Technology), STAT6 (1:50; 5397, Cell Signaling Technology), p-STAT6 (1:50; 56554, Cell Signaling Technology), STAT1 (1:50; 9172, Cell Signaling Technology) and p-STAT1 (1:50; 7649, Cell Signaling Technology). These antibodies were diluted with antibody diluent 2 (ProteinSimple). Secondary antibody was horseradish peroxidase (HRP)-conjugated anti-rabbit IgG antibody (ProteinSimple) or anti-mouse IgG antibody (ProteinSimple) and Lumino-S/peroxidase (ProteinSimple) was used as substrates for HRP.
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2

Evaluating Anti-Inflammatory Compound CMC2.24

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CMC2.24 compound with 99.5% purity [20 (link)] was kindly provided by Dr. Francis Johnson (Chem-Master Intl. Inc., Hauppauge, NY, USA). CMC2.24 was completely dissolved in dimethyl sulfoxide (DMSO) to a final concentration of 0.05 %. Medium plus 0.05 % DMSO was used as a solvent control. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Cat# ab37168), MMP-3 (Cat# ab52915), RUNX2 (Cat# ab23981), collagen 2a1 (Col2a1) (Cat# ab34712), Bcl-2 (Cat# ab196495), and vascular endothelial growth factor (VEGF) (Cat# ab214424) antibodies were obtained from Abcam (Cambridge, UK). Hif-2α (Cat# NB100-122) was obtained from Novus Biologicals (Littleton, Colorado, USA). Cleaved caspase-3 (Cat# 9664), phosphorylated-p65 (p-p65) (Cat# 3033), p65 (Cat# 8242), p-IκBα (Cat# 2859), and IκBα (Cat# 9242) antibodies were ordered from Cell Signaling Technology (Danvers, MA, USA). BMS-345541 (Cat# HY-10518) was obtained from MedChem Express (Monmouth Junction, NJ, USA). SNP (Cat# 1008) was procured from Youcare Pharmaceutical Group Co., Ltd (Beijing, China).
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3

Protein Expression Analysis in Cardiomyocytes

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Proteins extracted from heart tissue and cardiomyocytes. Protein concentration was detected by the BCA Protein assay kit (PC0020, Solarbio, Beijing, China). Equal amounts of protein were added and separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a PVDF membrane. The membranes were then blocked with 5% fat-free milk solution at room temperature for 1 h. Then, the membranes were incubated with primary antibodies against GSDMD (1:1,000, ab219800, Abcam), NLRP3 (1:1,000, ab263899, Abcam), caspase-1 (1:200, sc-56036, Santa Cruz Biotechnology), NF-κB P65 (1:1,000, #8242, Cell Signaling Technology), phosphorylated P65 (p-P65) (1:1,000, #3033, Cell Signaling Technology) and GAPDH (1:1,000, #5174, Cell Signaling Technology) at 4°C overnight, followed by secondary antibody for 1 h at room temperature. After washing three times, enhanced chemiluminescence (ECL) reagent was added to the membrane. The signal was detected using an ECL system.
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Macrophage Protein Expression Analysis

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Macrophages were lysed and extracted with RIPA buffer supplemented with protease and phosphatase inhibitors. The protein concentration was quanti ed using a BCA kit. Protein samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene uoride (PVDF) membranes. The membranes were blocked with 5% BSA and incubated overnight with primary antibodies against G-protein coupled receptor (GPR) 18 1:1000 (Sigma-Aldrich); 5-LOX 1:200 (Cayman); 15-LOX 1:1000 and CD206 1:1000 (both from Abcam); inducible nitric oxide synthase (iNOS) 1:1000 (ProteinTech); p38 1:1000; phosphorylated p38 (p-p38) 1:1000; p65 1:1000 and phosphorylated p65 (p-p65) 1:1000 (all from Cell Signaling Technology) at 4°C overnight. The membranes were washed and then incubated with horseradish peroxidase (HRP)-conjugated immunoglobulin G (IgG) secondary antibodies for 1 h at room temperature. Finally, the targeted bands were detected by enhanced chemiluminescence (ECL). Digital images were processed by a CCD camera (Bio-rad) and quanti ed using Image J software.
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5

Macrophage Signaling Pathway Analysis

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Macrophages or brain tissue of the ipsilateral hemispheres of pMCAO were extracted with RIPA buffer supplemented with inhibitors for protease and phosphatase. Protein concentration was quanti ed using a BCA kit (Thermo Scienti c). Protein samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene uoride (PVDF) membranes. The membranes were blocked with 5% BSA and incubated overnight with primary antibodies against 5-LOX 1:200 (Cayman Chemical); 15-LOX 1:1000 and CD206 1:1000 (both from Abcam); inducible nitric oxide synthase (iNOS) 1:1000 (ProteinTech); p38 1:1000; phosphorylated p38 (p-p38) 1:1000; p65 1:1000 and phosphorylated p65 (p-p65) 1:1000 (all from Cell Signaling Technology) at 4°C overnight. The membranes were washed and then incubated with horseradish peroxidase (HRP)-conjugated immunoglobulin G (IgG) secondary antibodies for 1 h at room temperature. Finally, the blots were detected by enhanced chemiluminescence (ECL). Digital images were processed by a CCD camera (Biorad) and quanti ed using Image J software.
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