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8 protocols using anti total p38 mapk

1

Western Blot Antibody Detection Protocol

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Western immunoblots were run as described previously [15] (link). Primary antibodies and their sources were as follows. Anti-total p38 MAPK, anti-total p53, anti-total p44/42 MAPK, anti-phosphorylated p44/42 (pp44/42) MAPK, and anti-phosphorylated p53 (pp53) were from Cell Signaling Technology. Anti-phosphorylated p38 (pp38) MAPK was from Millipore. Anti-β-actin and the secondary antibodies horseradish peroxidase-conjugated anti-rabbit IgG and anti-rabbit IgG were from Sigma-Aldrich. Anti-goat IgG was from Santa Cruz Biotechnology.
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2

Quantification of MAPK Signaling in VSMCs

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VSMCs were lysed in RIPA buffer (50 mM Tris-Cl, pH 8.0, 150 mM NaCl, 1% Nonidet P-40, 0.5% sodium deoxycholate, 0.1% SDS, 100 µg/mL phenylmethyl-sulfonyl fluoride, and 2 µg/mL aprotinin). The suspension was incubated on ice and then centrifuged (14 000 g, 10 minutes, 4°C). Protein concentrations were measured by Bradford assay with bovine serum albumin as a standard. 60 µg protein supernatants were used for electrophoresis. Primary antibodies were used at the indicated dilutions as follows: LTCCα1C, 1 : 200 (Alomone); β-actin, 1 : 1000; anti-p-p38 MAPK, 1 : 1000; anti-total-p38 MAPK, 1 : 1000; anti-p-JNK, 1 : 1000; anti-total-JNK 1 : 1000; anti-p-ERK1/2 (1 : 1000); and anti-total-ERK1/2 (1 : 1000); all were from Cell Signalling Technology (Danvers, MA). The intensity of the bands was quantified by densitometry. Blots were representative of at least three experiments.
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3

Quantifying Protein Phosphorylation Dynamics

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After determination of total tissue protein concentration by BCA protein assay kit, 40 μg of the protein prepared above was separated on 15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, then transferred the separated protein was to a PVDF membrane, and using 5% fat free milk-TBST buffer blocked the membrane for 2 hrs at room temperature; incubated it with the rabbit antibodies of anti-MCP-1 (ab9669,1:500, Abcam, UK), anti-total p38MAPK (#8690, 1:1000, Cell Signaling Technology, USA), anti-p-p38MAPK (9211S,1:1000, Cell Signaling Technology, USA) and anti β-actin antibody (A2228, 1: 2000, Sigma–Aldrich, USA) at 4°C overnight, followed with 1:5,000 secondary goat anti-rabbit antibodies incubation for 2 hrs (ab6721, Abcam, UK). The phosphorylated p38MAPK/total p38MAPK ratio was designated as the in vitro increased in p-p38 MAPK activity. After color development, the image was analyzed using ChemiScope mini chemiluminescence meter to calculate the optical density of the target and the internal control band for the protein expression. Protein expression = integral optical density value of the target protein/integral optical density value of β-actin.
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4

Western Blot Analysis of Signaling Proteins

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Western immunoblots were run as described previously [24 (link)]. Primary antibodies and their sources were as follows. Anti-total p38 MAPK, anti-phosphorylated p38 (pp38) MAPK, anti-Erk, anti-phosphorylated Erk, anti-activated caspase 3, anti-activated caspase 8 were from Cell Signaling Technology. Anti-β-actin and the secondary antibodies horseradish peroxidase-conjugated anti-rabbit IgG and anti-rabbit IgG were from Sigma-Aldrich. Anti-goat IgG was from Santa Cruz Biotechnology.
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5

Western Blotting Analysis of Vascular Proteins

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Protein was extracted from cleaned and snap frozen mesenteric arteries and aortas from WKY, SHRSP rats, and from cultured rat VSMCs. Protein (30 μg) was separated by electrophoresis on a polyacrylamide gel and transferred to a nitrocellulose membrane. Non-specific binding sites were blocked with 5% bovine serum albumin in Tris-buffered saline (TBS) solution. Membranes were then incubated with specific antibodies overnight at 4 °C. Membranes were washed 3 times with TBS-Tween 20 and incubated with specific secondary antibodies for 1 h at room temperature. Signals were revealed after reaction with enhanced chemiluminescence. Results were normalised to α-tubulin or β-actin, as indicated in the figures and are expressed as arbitrary units. In most of our studies we used α-tubulin as the housekeeping protein, except for the studies assessing p66Shc expression in aorta, where we used β-actin as our internal control. This related to technical aspects, where β-actin detection was superior to that of α-tubulin. Antibodies were as follows: anti-TGFβ (SC146, Santa Cruz, USA) anti-fibronectin (F3648, Sigma-Aldrich, UK), anti-phospho-p66Shc (566,807, Calbiochem, USA), anti-α-tubulin (AB4074, Abcam, UK), anti-phospho-p38MAPK (9211S, Cell Signaling, UK) anti-total-p38MAPK (9212S, Cell Signaling, UK), Nox1 (sc-25,545, Santa Cruz, USA) and anti-β-actin (ab8229, AbCam, UK).
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6

Immunoblotting Analysis of RV Tissue Lysates

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Immediately after ex vivo analysis, RV tissue was then washed in ice‐cold saline and snap‐frozen. RV tissue was then homogenized using an Omni international tissue grinder (Thermo Fisher Scientific, Waltham, MA) in ice‐cold RIPA lysis buffer (Thermo Fisher) containing proteinase inhibitor cocktail (EMD Millipore/Sigma‐Aldrich, St. Louis, MO) and PhosStop inhibitor cocktail (Roche, Indianapolis, IN). After homogenization, lysate was sonicated for ten one‐second pulses at 100% power and then centrifuged. The supernatant was saved and used as whole lung lysate. Protein concentration was measured using BCA Protein Assay (Thermo Fisher). Rabbit polyclonal anti‐phospho‐p38MAPK, anti‐total p38MAPK, anti‐bcl2, and anti‐bax (all used at 1:1000, and from Cell Signaling, Danvers, MA) and mouse monoclonal anti‐Vinculin loading control (1:5000; Calbiochem; Billerica, MA) primary antibodies were used, all diluted in Pierce Protein‐Free T20 Blocking Buffer (Thermo Fisher). All antibodies used have been extensively validated (Lin et al. 2005; Bernal‐Mizrachi et al. 2006; Bikkavilli et al. 2008; Tang et al. 2008; Slone et al. 2011; Choi et al. 2016; Jiang et al. 2016; Zhang et al. 2017). Rabbit‐HRP (Cell Signaling) and mouse‐HRP (KPL, Gaithersburg, MD) secondary antibodies were diluted 1:2000 in Pierce Protein‐Free T20 Blocking Buffer (Thermo Fisher). Densitometry was performed using ImageJ.
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7

Amaxa Nucleofection of Cell Lines

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Amaxa® Cell Line Nucleofector® Kit T and Amaxa® Glia Cell Nucleofector® Kit T were purchased from LONZA. Primers for quantitative RT-PCR were synthesized by Life Technologies. SYBR Green for quantitative RT-PCR was purchased from Roche. SP600125, Bay11–7082, SB203580, U0126 and LPS were purchased from Sigma. Amyloid-β 42 (Aβ42) peptide was purchased from AnaSpec. Oligomeric Aβ42 was prepared as previously described (Huang et al., 2015 (link)). Antibodies used in this study are as followed: anti-phospho-p38-MAPK, anti-total-p38-MAPK, anti-phospho-ERK1/2, anti-total-ERK1/2, anti-phospho-JNK, anti-total-JNK, anti-phospho-IκBα, anti-total-IκBα, anti-phosho-NF-κB, anti-total-NF-κB, anti-phospho-c-Jun, anti-total-c-Jun and anti-β-actin were purchased from Cell Signaling Technology; anti-tubulin (Millipore); anti-mouse IgG and anti-rabbit IgG antibody conjugated with horseradish peroxidase (ThermoFisher Scientific).
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8

Serum Starvation and FasL-Induced Apoptosis in MSCs

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MSCs were serum starved for 24 hours, before 0.2 ng/ml FasL was added. Cells were harvested at the indicated time points. To analyse the effects of tumour cell supernatants on MSCs, stem cells were seeded, and 24 hours later, the growth medium was replaced with cell supernatant for the indicated time-points. For caspase western blots hMSCs were treated with 5 ng/ml FasL or 5 ng/ml multimeric-FasL in regular growth medium for 24 hours. SDS-PAGE and transfer onto PVDF membranes were performed as described previously [57] . The following primary antibodies were used: anti-phospho-SAPK/JNK (Cell Signaling Technology, Danvers, MA, USA), anti-total-SAPK/JNK (Cell Signaling Technology), anti-phospho-p38 MAPK (Cell Signaling Technology), anti-total-p38 MAPK (Cell Signaling Technology), anti-phospho-ERK (Cell Signaling Technology), anti-total-ERK (Cell Signaling Technology), anti-CD95 (Santa Cruz Biotechnology, Dallas, TX, USA), anti-IκBα (Cell Signaling Technology), anti-caspase-3 (Biotechne), anti-caspase-8 (Cell Signaling Technology), anti-vimentin (BioLegend) and anti-CuZnSOD (Binding Site, Birmingham, UK). Peroxidase-conjugated secondary antibodies were anti-rabbit and anti-goat sourced from Santa Cruz. All antibodies were diluted to a working concentration of 1:1000. Proteins were visualised using ECL and a Fusion FX Chemidoc Imager (Vilber, Collégien, France).
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