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6 protocols using goat anti rabbit hrp secondary antibody

1

Protein Lysate Analysis by Western Blot

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Protein lysates were obtained by homogenizing tissue in RIPA buffer (50 mm Tris [pH 7.5], 1 mm EDTA, 1% Triton X‐100, 0.1% sodium deoxycholate, 0.1% SDS, 50 mm NaCl). 25 μg of protein was resolved on 4%–15% acrylamide gels, transferred to PVDF membranes, and probed overnight with primary antibodies: HMBP1 (3935S), p53 (32532S), and tubulin (2146S) from Cell Signaling and p16 (Abcam, Ab51243). Membranes were incubated with goat anti‐rabbit‐HRP secondary antibody (Santa Cruz Biotechnology, sc‐2004) and then ECL was applied to generate signal and imaged with ChemiDox MP imaging system (Bio‐Rad). Intensities of protein detection were quantified using imagej2.
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2

VgrG5 Protein Detection in Glutathione Samples

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For detection of VgrG5 in glutathione-induced samples, 100 µl of broth culture was washed once with PBS and boiled in 1× SDS sample buffer three times for 10 min each. Samples were run on a 10% SDS–PAGE gel and the gel contents were transferred to a nitrocellulose membrane (ThermoFisher, 88018). Membrane was blocked for 30 min in TBS-T (20 mM Tris, pH 8.0, 150 mM NaCl, 0.1% Tween 20 [Sigma, P9416]) containing 5% milk (Genesee, 20-241), then incubated with 1:5000 anti-VgrG in 5% milk in TBS-T overnight at 4°C. The membrane was then washed 3 × 5 min in TBS-T and incubated with 1:5000 goat anti-rabbit HRP secondary antibody (Santa Cruz Biotechnology, sc-2004) in 5% milk in TBS-T for 1 h followed by 3 × 5-min washes in TBS-T. To detect secondary antibodies, ECL HRP substrate kit (Advansta, K-12045) was added to the membrane for 1 min at room temperature and developed using HyBlot ES High Sensitivity Film (Thomas Scientific 1156P37).
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3

Protein Extraction and Western Blotting

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Tissues or cells were homogenized with an ultrasound homogenizer (BANDELIN electronic GmbH) in lysis buffer containing 10% NP40, 0.1 mg/mL n-Dodecyl-β-maltoside, 500 mM sodium fluoride, 10 mM sodium metavanadate, 100 mM PMSF, 1 M Tris (pH 7.5), 0.5 M EDTA and 5 M NaCl, followed by a 60 min incubation on ice to isolate the proteins. Afterwards, the cells were centrifuged and the supernatants were collected and stored at −80 °C overnight. Protein concentrations were determined by the Bradford assay according to the manufacturer’s instructions. Thirty micrograms of protein was separated on a 15% SDS gel and electrophoresed at 80 V. Proteins were transferred to a 0.45 μm nitrocellulose membrane in transfer buffer containing 20% methanol, 0.19 M glycine and 0.025 M Tris (pH 8.3) at 80 V for 2 h on ice. After blocking nonspecific-binding sites with 5% skim milk powder in TBS for 1 h, membranes were incubated overnight at 4 °C with primary antibodies against Mcpt5 (1:200 in 5% BSA in TBS/Tween), and then for 2 h at room temperature with a goat anti rabbit-HRP secondary antibody (Santa Cruz, 1:1,000 in 5% BSA in TBS/Tween).
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4

Quantitative Western Blot Analysis

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Western blot analysis was performed as previously described [16, 17] . The protein blots were incubated with anti-ARID1A antibody (1:1000; catalog no., #12354; Cell Signaling Technology, Danvers, MA, USA), anti-phosphorylated (p)-AKT Ser473 (1:2000; #4060; Cell Signaling Technology), and anti-AKT (1:2000; #4691; Cell Signaling Technology), overnight at 4 °C, followed by incubation with goat anti-rabbit HRP secondary antibody (Santa Cruz Biotechnology, Dallas, Texas, USA) for 1 h at room temperature. The protein levels were quantified using a primary mouse anti-β-actin antibody (dilution, 1:5000; #sc-69789; Santa Cruz Biotechnology) as the internal loading control for 1 h at room temperature. Bound antibodies were detected using the SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher Scientific), visualized by autoradiography (ImageQuant ™ LAS 4000 IR MultiColor imager; Fujifilm Corporation, Tokyo, Japan), and quantified with Image J software (Version 1.52 s, National Institutes of Health, Bethesda, MD, USA).
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5

Western Blot Analysis of DUX4 Protein

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DIE cells were harvested by trypsinization and lysed with RIPA buffer. Total protein concentrations were determined using a Pierce BCA protein assay kit (Fischer Scientific). 20ug protein was denatured using 4x Laemmli sample buffer (Bio-Rad) with 10% BME (Sigma), and boiled for 5 minutes. Samples were run on a 15% SDS-polyacrylamide gel and transferred to a PVDF membrane (Merck). Membranes were blocked for an hour using 5% BSA in TBST, and were subsequently incubated overnight with anti-DUX4 antibody [E5-5] (Abcam, ab124699) in blocking solution (5% BSA in TBST), at 4°C. Membranes were than incubated for an hour with secondary goat anti-rabbit-HRP antibody (Santa Cruz, sc-2004), and primary rabbit mAb β-Actin HRP conjugated antibody (Cell signaling, 5125s) in blocking buffer. Chemiluminescent signal was detected using GE ImageQuant LAS 4000 imager, upon admission of Pierce ECL Plus Western Blotting substrate (Fischer Scientific).
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6

Western Blot Analysis of DUX4 Protein

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DIE cells were harvested by trypsinization and lysed with RIPA buffer. Total protein concentrations were determined using a Pierce BCA protein assay kit (Fischer Scientific). 20ug protein was denatured using 4x Laemmli sample buffer (Bio-rad) with 10% BME (Sigma), and boiled for 5 minutes. Samples were run on a 15% SDSpolyacrylamide gel and transferred to a PVDF membrane (Merck). Membranes were blocked for an hour using 5% BSA in TBST, and were subsequently incubated overnight with anti-DUX4 antibody [E5-5] (Abcam, ab124699) in blocking solution (5% BSA in TBST), at 4°C. Membranes were than incubated for an hour with Secondary goat anti-rabbit-HRP antibody (Santa Cruz, sc-2004), and primary rabbit mAb β-Actin HRP conjugated antibody (Cell signaling, 5125s) in blocking buffer. Chemiluminescent signal was detected using GE ImageQuant LAS 4000 imager, upon admission of Pierce ECL Plus Western Blotting substrate (Fischer Scientific).
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