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6 protocols using mk1903

1

Molecular Regulation of Myoblast Inflammation

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C2C12 myoblasts were plated in 6‐well culture dishes at a confluency of 60%. The next day GPR109A gene silencing was obtained by transfection of predesigned siRNA sequences (Cat# AM16708, Life Technologies) using Lipofectamine® 2000 reagent (Cat# 11668‐027, Life Technologies) according to the manufacturer's instructions. Control cells were transfected with a scrambled siRNA sequence (Cat# AM4642, Life Technologies) as a negative control. At 24 h following transfection, C2C12 were treated with 1 μg/ml lipopolysaccharides (LPS; O111:B4, Sigma‐Aldrich) for 3 h according to published procedures (Frost et al, 2003 (link)). NaB 3 mM (den Besten et al, 2015 (link)) (Cat# 303410 Life Technologies), T0070907 1 μM (Cat# 2301, Tocris UK), MK1903 (Cat# 4622, Tocris UK), and rosiglitazone (Cat# 5325, Tocris UK) were preincubated 1 h before the LPS stimulation.
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2

Modulation of GPR-mediated Signaling

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All agonists, drugs and inhibitors were dissolved in glycerol, DMSO or water following the manufacturer’s recommendations. SCFAs were from Sigma-Aldrich and used in a range of concentrations from 0.5 to 8 mM. GPRs agonists used were: GPR41: 4-CMTB (1 μM, Tocris 4642) and Tiglic acid (1–10 mM, Sigma); GPR43: AR420626 (1 μM, Cayman) and MCPC (1 mM, Sigma); GPR109a: Niacine (1 mM–10 mM, Sigma) and MK1903 (1 μM, Tocris). GPRs sub-unit inhibitors used were: Pertussis toxin (Ptx, 0.2 μg/ml, Sigma) and U73122 (Sigma 10 μM). MCT inhibitors used were: AR-C155858 (0.4 μM, Tocris), p-Chloromercuribenzoate acid (pCMB, 100 μM, Sigma). HDAC inhibitors used were: Trichostatin A (TSA, 1 μM, Sigma), SAHA (5 μM, Sigma). SP1 competitive inhibitor used was the Mithramycin A (0.1 μM) from Sigma. IL1β (10 ng/ml) and TNFα (10 ng/ml) were from Peprotech. Phorbol 12-myristate 13-acetate (PMA, 100 nM) was from Sigma.
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3

Pharmacological Inhibitors in Cellular Assays

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Bicuculline, strychnine, MK1903, and tetrodotoxin were obtained from Tocris (Bristol, UK). IL-18BP was purchased from Mybiosource (San Diego, CA). SB203580 was purchased from Invivogen (San Diego, CA). All other reagents were obtained from Sigma-Aldrich (St. Louis, MO).
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4

Modulation of GPR Signaling Pathways

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All agonists, drugs and inhibitors were dissolved in glycerol, DMSO or water. Sodium salt of SCFAs were from Sigma and used in a range of concentrations from 0.5 to 8 mM. GPRs agonists: GPR41: 4-CMTB (1 μM Tocris) and Tiglic acid (1–10 mM Sigma); GPR43: AR420626 (1 μM Cayman) and 1-MCPC (1mM Sigma); GPR109a: Niacine (1–10 mM, Sigma) and MK1903 (1 μM Tocris). GPRs sub-unit inhibitors used were: Pertussis toxin (Ptx 0.2 μg/ml) and U73122 (10 μM) from Sigma. HDAC inhibitors: Trichostatin A (TSA 1 μM Sigma), SAHA (5 μM Sigma) and valproic acid (VPA 5 mM Sigma). SP1 inhibitor Mithramycin A (0.1 μM Sigma). PPARγ activators: Pioglitazone (5 μM), Roziglitazone (10 μM) and PPARγ inhibitor G9662 (100 μM), from Cayman. NF-kB inhibitor BAY 11-7082 (40 μM). AP-1 inhibitor SR-11302 (10 μM Tocris). STAT3/Jak2 inhibitor Cucurbitacin I (1 μM) from Tocris. IFNγ (100 U/ml) and TNFα (10 ng/ml) were from Peprotech. Final concentration of DMSO had no detectable effect on cells viability or responses.
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5

GPR109a and GPR43 Agonists Regulate T Cell Proliferation

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MK1903 (GPR109a agonist, Tocris Bioscience)) and 4-CMTB (GPR43 agonist, Tocris Bioscience)) were reconstituted in DMSO per the manufacturer’s instructions and working stocks (100mM) stored at 4 degrees C. Working stocks were serially diluted in culture media and added to CFSE-labeled purified LP CD4 T cells and proliferation in response to TCR-bead stimulation measured after 4 days as detailed above.
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6

Investigating SCFA-mediated Cell Metabolic Regulation

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All agonists, antagonists and drugs tested were dissolved in a proper vehicle (DMSO, glycerol, water, PBS or ethanol) following the manufacturer’s recommendations. The final concentration used for vehicles had not detectable effect on metabolic activity of the cells. Sodium salts of tested SCFAs were from Sigma and used in a range of concentration from 0.125 to 8 mM (20 mM for acetate). AhR agonist: 2,3,7,8-Tetrachlorodibenzodioxin (TCDD 10 nM, Sigma). GPRs agonists: GPR41: 4-chloro-α-(1-methylethyl)-N-2-thiazolylbenzeneacetamide (4-CMTB 1 µM, Tocris) and Tiglic acid (1 mM, Sigma); GPR43: N-(2,5-Dichlorophenyl)-4-(furan-2-yl)-2-methyl-5-oxo-1,4,5,6,7,8-hexahydro-quinoline-3-carboxamide (AR420626 1 µM, Cayman) and 1-methylcyclopropane carboxylate (MCPC 1 mM, Sigma); GPR109a: Niacine (1 mM, Sigma) and (4aR, 5aR)-4,4a,5,5a-Tetrahydro-1H-cyclopropa[4,5]cyclopenta[1,2]pyrazole-3-carboxylic acid (MK1903 1 µM, Tocris). Pertussis toxin (Ptx at 0.2 µg/mL, Sigma) was used as Gαi-subunit inhibitor. MCT1 inhibitor used was p-Chloromercuribenzoate acid (pCMB 100 μM, Sigma). HDAC inhibitors: Trichostatin A (TSA 0.1 and 1 µM, Sigma), vorinostat (SAHA 5 µM, Sigma) and valproic acid (VPA 5 mM, Sigma). AhR antagonists: CH-22319 (1 µM, Millipore/Calbiochem), GNF-351 (1 µM, Millipore/Calbiochem), (−)Epigallocathechin gallate (20 µM, EGCG, Sigma).
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