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7 protocols using ml141

1

Cytokine Signaling and Cell Migration

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Cytokine and inhibitors; purified recombinant human HGF was obtained from Peprotech. The c-Met receptor inhibitor (PHA-665752 ≤ 1 μM), MAPK pathway inhibitor (PD98059 ≤ 40 μM), Arp2/3 complex inhibitor (CK-666 ≤ 200 μM) and CDC42 inhibitor (ML-141 ≤ 20 μM) were obtained from Cayman Chemical. The ROCK pathway inhibitor (Y27632 ≤ 7.5 μM) and FAK inhibitor (PF-562,271; 1 μM) were purchased from Merck. The PI3K pathway inhibitor (LY294002 ≤ 100 μM) and the Rac1 inhibitor (6-Thio-GTP≤50 μM) were obtained from Selleck Chemicals and Jena Bioscience, respectively. The functionally blocking β1-integrin antibody (≤10 μg/ml) and its mouse IgG1 isotype were purchased from Abcam.
Immunofluorescence; primary and secondary antibodies, rabbit anti-Met, and rat anti-α-tubulin were obtained from Invitrogen. Mouse anti-paxillin was obtained from BD Bioscience. Mouse anti–β1-integrin was obtained from Abcam. Alexafluor-conjugated secondary antibodies (488, 568, and 647 nm), Rhodamine phalloidin, DiO’, and DiOC18(3) (3,3′-Dioctadecyloxacarbocyanine Perchlorate) were all purchased from Invitrogen. The mitochondrial staining kit, red fluorescence-cytopainter, was purchased from Abcam. Vectashield mounting medium was obtained from Vector Laboratories Ltd., and DAPI was obtained from Invitrogen.
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2

Inhibition of Rho GTPase Signaling

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The following chemical inhibitors were purchased from Cayman Chemical: Cilengitide (No. 22289), NSC23766 (No. 13196), and ML141 (No. 18496). Rhosin (No. 5003/10) was purchased from R&D Systems. DMSO was used as a negative control and purchased from Sigma.
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3

Isolation and Culture of Intestinal Organoids

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Small intestinal and colonic crypts were isolated according to the manufacturer’s recommendation (STEMCELL, technical bulletin #28223). Briefly, 20cm of small intestine proximal to the stomach were harvested from 6–8 week-old WTIEC and DDX5ΔIEC littermates and cut into 2mm pieces. After 20 washes in cold PBS, tissues were resuspended in 25mL room temperature Gentle Cell Dissociation Reagent (STEMCELL, #07174) and incubated at room temperature for 15 minutes on a rocking platform at 20 rpm. The pellets enriched with intestinal crypts were resuspended in cold PBS containing 0.1% BSA. Isolated colonic crypts were embedded in Corning® Matrigel® Matrix (Corning 356231) and seeded onto pre-warmed, non-treated 24-well plates (CytoOne® by StarLab) and overlaid with conditioned media (STEMCELL, #6005) as described previously50 (link). Organoids were treated with recombinant mouse IL-13 (BioLegend, 20ng/ml), NaCl (Sigma, 15μM), DMSO (Sigma), or ML141 (Cayman Chemical, 10μM). Organoid pictures were imaged using a Keyence bz-x800 microscope at 20X magnification with image stacks capturing the entire organoid volume.
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4

Signaling Pathway Modulators: Procurement

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Genistein, daidzein, and E2 were purchased from Sigma (St. Louis, MO, USA). S-equol, G-15, casin, ML-141, LY294002, and U0126 were purchased from Cayman Chemical (Ann Arbor, MI, USA). Rhosin HCl was purchased from Tocris Bioscience (Avonmouth, Bristol, UK). The purity of all chemicals was >98%.
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5

Inhibiting Actin Regulators in CD4+ T Cells

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Actin regulatory proteins were chemically inhibited in migrating primary CD4+ T cells to compare their morphologies to HIV-1 infected cells. CDC42 was inhibited by adding 10μM ML 141 (Cayman Chemical, Catolog #18496). Rac proteins (Rac1, Rac1b, Rac2, and Rac3) were inhibited by adding 20μM EHT 1864 (Cayman Chemical Company, Catalog #17258). Pak1/2 were inhibited by adding 50μM IPA-3 (Cayman Chemical Company, Catalog #14759). ARP2/3 was inhibited by adding 200μM CK-666 (Cayman Chemical, Catalog #29038) to the media.
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6

Magnetic Resonance Imaging Contrast Agents

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Omniscan, Magnescope, Magnevist, and Gadovist (Fig. 1) were obtained from their respective manufacturers and then diluted with distilled water to their final concentrations. Cyclo (Ala-Arg-Gly-Asp-3-Aminomethylbenzoyl) was purchased from Sigma (St. Louis, MO, USA). cRGDfV, PF573228, LY294002, U0126, CASIN, ML–141, and EHT–1846 were purchased from Cayman Chemical (Ann Arbor, MI, USA). Rhosin HCl was purchased from Tocris Bioscience (Avonmouth, Bristol, UK). The purity of all chemicals was > 98%.
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7

Inhibiting p22 Downstream Signaling

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To perturb downstream signaling of p22, 8-9 hours post transfection, Latrunculin A (abcam), Wiskostatin (Sigma Aldrich), CK666 (Sigma Aldrich), smifH2 (CalBioChem), ZCL278 (Cayman Chemical), ML141 (Cayman Chemical) were added to complete media at specified concentrations. DMSO was used as vehicle control, and 36 hours post transfection the cells were imaged to quantify the extent of cell-cell fusion.
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